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Cluster: Rep_1117_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1117_c_1 Rep_1117_c_1_82 81013 83427 + 3.A.12.1.1
CAZyme Rep_1117_c_1 Rep_1117_c_1_83 83637 85829 + CBM41 | GH13_14
CAZyme Rep_1117_c_1 Rep_1117_c_1_84 86001 87881 + CBM48 | GH13_9
pfam Rep_1117_c_1 Rep_1117_c_1_85 88072 89214 + NTP_transferase | Hexapep_GlmU
pfam Rep_1117_c_1 Rep_1117_c_1_86 89204 90340 + NTP_transferase | Hexapep_GlmU
CAZyme Rep_1117_c_1 Rep_1117_c_1_87 90337 91767 + GT5
CAZyme Rep_1117_c_1 Rep_1117_c_1_88 92098 94503 + GT35
Gene ID: Rep_1117_c_1_82
Type: TC
Location: 81013 - 83427 (+)
Gene ID: Rep_1117_c_1_83
Type: CAZyme
Location: 83637 - 85829 (+)
Gene ID: Rep_1117_c_1_84
Type: CAZyme
Location: 86001 - 87881 (+)
Gene ID: Rep_1117_c_1_85
Type: pfam
Location: 88072 - 89214 (+)
Gene ID: Rep_1117_c_1_86
Type: pfam
Location: 89204 - 90340 (+)
Gene ID: Rep_1117_c_1_87
Type: CAZyme
Location: 90337 - 91767 (+)
Gene ID: Rep_1117_c_1_88
Type: CAZyme
Location: 92098 - 94503 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1117_c_1_85 vegan > omnivore 1.51620 0.01589
Rep_1117_c_1_85 vegetarian > omnivore 1.37377 0.01213

🧭 Explore Read Mapping of CGC

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