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Cluster: Rep_1117_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1117_c_1 Rep_1117_c_1_28 23199 24125 + GT2
NULL(UNKNOWN) Rep_1117_c_1 Rep_1117_c_1_29 24130 25437 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1117_c_1 Rep_1117_c_1_30 25511 26362 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme Rep_1117_c_1 Rep_1117_c_1_31 26700 27458 + GT111
TC Rep_1117_c_1 Rep_1117_c_1_32 27455 28912 + 2.A.66.2.16
STP Rep_1117_c_1 Rep_1117_c_1_33 28915 30024 + Pyr_redox
pfam Rep_1117_c_1 Rep_1117_c_1_34 30038 30133 + Glycos_transf_2
CAZyme Rep_1117_c_1 Rep_1117_c_1_35 30957 31949 + GT8
CAZyme Rep_1117_c_1 Rep_1117_c_1_36 31991 32695 + GT2
pfam Rep_1117_c_1 Rep_1117_c_1_37 32695 33048 + DUF2304
CAZyme Rep_1117_c_1 Rep_1117_c_1_38 33041 33817 + GT2
CAZyme Rep_1117_c_1 Rep_1117_c_1_39 34022 36973 + GT2
pfam Rep_1117_c_1 Rep_1117_c_1_40 37032 38267 + DUF2142
CAZyme Rep_1117_c_1 Rep_1117_c_1_41 38271 39503 + GT4
CAZyme Rep_1117_c_1 Rep_1117_c_1_42 39621 40769 + GT4
CAZyme Rep_1117_c_1 Rep_1117_c_1_43 40766 41704 + GT2
pfam Rep_1117_c_1 Rep_1117_c_1_44 41705 42511 + ABC2_membrane
TC Rep_1117_c_1 Rep_1117_c_1_45 42511 43713 + 3.A.1.103.5
Gene ID: Rep_1117_c_1_28
Type: CAZyme
Location: 23199 - 24125 (+)
Gene ID: Rep_1117_c_1_29
Type:
Location: 24130 - 25437 (+)
Gene ID: Rep_1117_c_1_30
Type: pfam
Location: 25511 - 26362 (+)
Gene ID: Rep_1117_c_1_31
Type: CAZyme
Location: 26700 - 27458 (+)
Gene ID: Rep_1117_c_1_32
Type: TC
Location: 27455 - 28912 (+)
Gene ID: Rep_1117_c_1_33
Type: STP
Location: 28915 - 30024 (+)
Gene ID: Rep_1117_c_1_34
Type: pfam
Location: 30038 - 30133 (+)
Gene ID: Rep_1117_c_1_35
Type: CAZyme
Location: 30957 - 31949 (+)
Gene ID: Rep_1117_c_1_36
Type: CAZyme
Location: 31991 - 32695 (+)
Gene ID: Rep_1117_c_1_37
Type: pfam
Location: 32695 - 33048 (+)
Gene ID: Rep_1117_c_1_38
Type: CAZyme
Location: 33041 - 33817 (+)
Gene ID: Rep_1117_c_1_39
Type: CAZyme
Location: 34022 - 36973 (+)
Gene ID: Rep_1117_c_1_40
Type: pfam
Location: 37032 - 38267 (+)
Gene ID: Rep_1117_c_1_41
Type: CAZyme
Location: 38271 - 39503 (+)
Gene ID: Rep_1117_c_1_42
Type: CAZyme
Location: 39621 - 40769 (+)
Gene ID: Rep_1117_c_1_43
Type: CAZyme
Location: 40766 - 41704 (+)
Gene ID: Rep_1117_c_1_44
Type: pfam
Location: 41705 - 42511 (+)
Gene ID: Rep_1117_c_1_45
Type: TC
Location: 42511 - 43713 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1117_c_1_30 vegan > omnivore 1.40374 0.01589

🧭 Explore Read Mapping of CGC

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