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Cluster: Rep_1117_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1117_c_9 Rep_1117_c_9_54 51354 52190 + 3.A.1.26.5
TC Rep_1117_c_9 Rep_1117_c_9_55 52177 52977 + 3.A.1.23.2
pfam Rep_1117_c_9 Rep_1117_c_9_56 53445 53759 - DDE_Tnp_IS240
pfam Rep_1117_c_9 Rep_1117_c_9_57 54641 55981 + Glycos_transf_1 | Glyco_trans_1_4
TC Rep_1117_c_9 Rep_1117_c_9_58 55983 57338 + 2.A.21.3.7
pfam Rep_1117_c_9 Rep_1117_c_9_59 57322 58026 + CTP_transf_3
CAZyme Rep_1117_c_9 Rep_1117_c_9_60 58023 58901 + GT52
Gene ID: Rep_1117_c_9_54
Type: TC
Location: 51354 - 52190 (+)
Gene ID: Rep_1117_c_9_55
Type: TC
Location: 52177 - 52977 (+)
Gene ID: Rep_1117_c_9_56
Type: pfam
Location: 53445 - 53759 (-)
Gene ID: Rep_1117_c_9_57
Type: pfam
Location: 54641 - 55981 (+)
Gene ID: Rep_1117_c_9_58
Type: TC
Location: 55983 - 57338 (+)
Gene ID: Rep_1117_c_9_59
Type: pfam
Location: 57322 - 58026 (+)
Gene ID: Rep_1117_c_9_60
Type: CAZyme
Location: 58023 - 58901 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1117_c_9_54 vegan > omnivore 1.24544 0.01589
Rep_1117_c_9_54 vegetarian > omnivore 1.87135 0.00385

🧭 Explore Read Mapping of CGC

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