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Cluster: Rep_1117_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1117_c_8 Rep_1117_c_8_28 39652 40896 - 2.A.120.1.1
CAZyme Rep_1117_c_8 Rep_1117_c_8_29 41002 42150 - CE9
TC Rep_1117_c_8 Rep_1117_c_8_30 42235 43866 - 2.A.58.2.2
pfam Rep_1117_c_8 Rep_1117_c_8_31 44252 44758 + Imp-YgjV
pfam Rep_1117_c_8 Rep_1117_c_8_32 44777 45598 - Hydrolase | S6PP | Hydrolase_3
CAZyme Rep_1117_c_8 Rep_1117_c_8_33 45621 46277 - GH73
pfam Rep_1117_c_8 Rep_1117_c_8_34 46368 46709 - P-II | DUF3240
TC Rep_1117_c_8 Rep_1117_c_8_35 46720 47955 - 1.A.11.1.5
Gene ID: Rep_1117_c_8_28
Type: TC
Location: 39652 - 40896 (-)
Gene ID: Rep_1117_c_8_29
Type: CAZyme
Location: 41002 - 42150 (-)
Gene ID: Rep_1117_c_8_30
Type: TC
Location: 42235 - 43866 (-)
Gene ID: Rep_1117_c_8_31
Type: pfam
Location: 44252 - 44758 (+)
Gene ID: Rep_1117_c_8_32
Type: pfam
Location: 44777 - 45598 (-)
Gene ID: Rep_1117_c_8_33
Type: CAZyme
Location: 45621 - 46277 (-)
Gene ID: Rep_1117_c_8_34
Type: pfam
Location: 46368 - 46709 (-)
Gene ID: Rep_1117_c_8_35
Type: TC
Location: 46720 - 47955 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1117_c_8_29 vegan > omnivore 1.34361 0.01589
Rep_1117_c_8_30 vegan > omnivore 1.35450 0.01589
Rep_1117_c_8_30 vegetarian > omnivore 1.93889 0.00385

🧭 Explore Read Mapping of CGC

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