dbCAN Logo

Cluster: Rep_1117_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1117_c_0 Rep_1117_c_0_270 314106 314693 + GH23
TC Rep_1117_c_0 Rep_1117_c_0_271 314725 316464 + 3.A.1.135.7
TC Rep_1117_c_0 Rep_1117_c_0_272 316454 318202 + 3.A.1.135.9
TC Rep_1117_c_0 Rep_1117_c_0_273 318519 320069 + 4.C.1.1.7
TC Rep_1117_c_0 Rep_1117_c_0_274 320066 321313 + 2.A.50.2.1
pfam Rep_1117_c_0 Rep_1117_c_0_275 321331 321570 + PP-binding
pfam Rep_1117_c_0 Rep_1117_c_0_276 321563 322831 + DltD
TC Rep_1117_c_0 Rep_1117_c_0_277 323246 325882 - 3.A.3.2.22
Gene ID: Rep_1117_c_0_270
Type: CAZyme
Location: 314106 - 314693 (+)
Gene ID: Rep_1117_c_0_271
Type: TC
Location: 314725 - 316464 (+)
Gene ID: Rep_1117_c_0_272
Type: TC
Location: 316454 - 318202 (+)
Gene ID: Rep_1117_c_0_273
Type: TC
Location: 318519 - 320069 (+)
Gene ID: Rep_1117_c_0_274
Type: TC
Location: 320066 - 321313 (+)
Gene ID: Rep_1117_c_0_275
Type: pfam
Location: 321331 - 321570 (+)
Gene ID: Rep_1117_c_0_276
Type: pfam
Location: 321563 - 322831 (+)
Gene ID: Rep_1117_c_0_277
Type: TC
Location: 323246 - 325882 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List