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Cluster: Rep_1117_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1117_c_7 Rep_1117_c_7_49 44401 46956 - 2.A.1.3.35
peptidase Rep_1117_c_7 Rep_1117_c_7_50 46953 47672 - S33.010
TC Rep_1117_c_7 Rep_1117_c_7_51 47786 48115 - 9.B.44.2.4
TC Rep_1117_c_7 Rep_1117_c_7_52 48205 50124 - 3.A.1.121.4
pfam Rep_1117_c_7 Rep_1117_c_7_53 50161 50796 - PRK
TC Rep_1117_c_7 Rep_1117_c_7_54 50888 51970 + 3.A.18.1.1
pfam Rep_1117_c_7 Rep_1117_c_7_55 52025 53188 - CPSase_L_D2 | ATP-grasp_4
peptidase Rep_1117_c_7 Rep_1117_c_7_56 53234 53974 - S09.UNW
CAZyme Rep_1117_c_7 Rep_1117_c_7_57 54026 54853 - CE1
Gene ID: Rep_1117_c_7_49
Type: TC
Location: 44401 - 46956 (-)
Gene ID: Rep_1117_c_7_50
Type: peptidase
Location: 46953 - 47672 (-)
Gene ID: Rep_1117_c_7_51
Type: TC
Location: 47786 - 48115 (-)
Gene ID: Rep_1117_c_7_52
Type: TC
Location: 48205 - 50124 (-)
Gene ID: Rep_1117_c_7_53
Type: pfam
Location: 50161 - 50796 (-)
Gene ID: Rep_1117_c_7_54
Type: TC
Location: 50888 - 51970 (+)
Gene ID: Rep_1117_c_7_55
Type: pfam
Location: 52025 - 53188 (-)
Gene ID: Rep_1117_c_7_56
Type: peptidase
Location: 53234 - 53974 (-)
Gene ID: Rep_1117_c_7_57
Type: CAZyme
Location: 54026 - 54853 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1117_c_7_57 vegan > omnivore 1.44317 0.01589
Rep_1117_c_7_57 vegetarian > omnivore 2.43436 0.01213

🧭 Explore Read Mapping of CGC

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