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Cluster: Rep_1117_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1117_c_4 Rep_1117_c_4_45 44092 46353 - GT35
CAZyme Rep_1117_c_4 Rep_1117_c_4_46 46355 47854 - GH77
TF Rep_1117_c_4 Rep_1117_c_4_47 48108 49109 - LacI
TC Rep_1117_c_4 Rep_1117_c_4_48 49296 50543 + 3.A.1.1.27
TC Rep_1117_c_4 Rep_1117_c_4_49 50659 52017 + 3.A.1.1.27
TC Rep_1117_c_4 Rep_1117_c_4_50 52017 52853 + 3.A.1.1.27
TC Rep_1117_c_4 Rep_1117_c_4_51 52869 54005 + 3.A.1.1.28
pfam Rep_1117_c_4 Rep_1117_c_4_52 54306 54494 - TatA_B_E
TC Rep_1117_c_4 Rep_1117_c_4_53 54507 55214 - 2.A.64.3.1
TC Rep_1117_c_4 Rep_1117_c_4_54 55222 56907 - 2.A.108.2.5
TC Rep_1117_c_4 Rep_1117_c_4_55 56885 58090 - 2.A.108.2.3
TC Rep_1117_c_4 Rep_1117_c_4_56 58096 58968 - 2.A.108.2.3
CAZyme Rep_1117_c_4 Rep_1117_c_4_57 59219 62932 - CBM41 | CBM41 | GH13_12
CAZyme Rep_1117_c_4 Rep_1117_c_4_58 63051 67295 - GH25
Gene ID: Rep_1117_c_4_45
Type: CAZyme
Location: 44092 - 46353 (-)
Gene ID: Rep_1117_c_4_46
Type: CAZyme
Location: 46355 - 47854 (-)
Gene ID: Rep_1117_c_4_47
Type: TF
Location: 48108 - 49109 (-)
Gene ID: Rep_1117_c_4_48
Type: TC
Location: 49296 - 50543 (+)
Gene ID: Rep_1117_c_4_49
Type: TC
Location: 50659 - 52017 (+)
Gene ID: Rep_1117_c_4_50
Type: TC
Location: 52017 - 52853 (+)
Gene ID: Rep_1117_c_4_51
Type: TC
Location: 52869 - 54005 (+)
Gene ID: Rep_1117_c_4_52
Type: pfam
Location: 54306 - 54494 (-)
Gene ID: Rep_1117_c_4_53
Type: TC
Location: 54507 - 55214 (-)
Gene ID: Rep_1117_c_4_54
Type: TC
Location: 55222 - 56907 (-)
Gene ID: Rep_1117_c_4_55
Type: TC
Location: 56885 - 58090 (-)
Gene ID: Rep_1117_c_4_56
Type: TC
Location: 58096 - 58968 (-)
Gene ID: Rep_1117_c_4_57
Type: CAZyme
Location: 59219 - 62932 (-)
Gene ID: Rep_1117_c_4_58
Type: CAZyme
Location: 63051 - 67295 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1117_c_4_45 vegan > omnivore 1.21302 0.00694
Rep_1117_c_4_48 vegan > omnivore 1.04353 0.01589
Rep_1117_c_4_55 vegan > omnivore 1.32247 0.01589
Rep_1117_c_4_55 vegetarian > omnivore 2.01645 0.00385

🧭 Explore Read Mapping of CGC

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