Cluster: Rep_1106_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: pectin
- Genome ID: Rep_1106
- CGC Family ID: CGCFAM_00378
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1106_c_4 | Rep_1106_c_4_377 | 407830 | 410940 | + | CE12 | PL11 |
| NULL(UNKNOWN) | Rep_1106_c_4 | Rep_1106_c_4_378 | 411011 | 411676 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1106_c_4 | Rep_1106_c_4_379 | 411938 | 414565 | - | CE12 | GH42 |
| CAZyme | Rep_1106_c_4 | Rep_1106_c_4_380 | 414543 | 415622 | - | GH105 |
| TC | Rep_1106_c_4 | Rep_1106_c_4_381 | 415723 | 416559 | - | 3.A.1.1.11 |
| TC | Rep_1106_c_4 | Rep_1106_c_4_382 | 416562 | 417509 | - | 3.A.1.1.11 |
| STP | Rep_1106_c_4 | Rep_1106_c_4_383 | 417493 | 418809 | - | SBP_bac_1 |
| pfam | Rep_1106_c_4 | Rep_1106_c_4_384 | 419274 | 419927 | + | DUF624 |
| TC | Rep_1106_c_4 | Rep_1106_c_4_385 | 419896 | 421674 | + | 8.A.59.2.1 |
| TF | Rep_1106_c_4 | Rep_1106_c_4_386 | 421671 | 423113 | + | HTH_AraC |
| pfam | Rep_1106_c_4 | Rep_1106_c_4_387 | 423184 | 424011 | - | AP_endonuc_2 |
| CAZyme | Rep_1106_c_4 | Rep_1106_c_4_388 | 424115 | 425221 | - | GH105 |
Gene ID: Rep_1106_c_4_377
Type: CAZyme
Location: 407830 - 410940 (+)
Type: CAZyme
Location: 407830 - 410940 (+)
Gene ID: Rep_1106_c_4_378
Type:
Location: 411011 - 411676 (-)
Type:
Location: 411011 - 411676 (-)
Gene ID: Rep_1106_c_4_379
Type: CAZyme
Location: 411938 - 414565 (-)
Type: CAZyme
Location: 411938 - 414565 (-)
Gene ID: Rep_1106_c_4_380
Type: CAZyme
Location: 414543 - 415622 (-)
Type: CAZyme
Location: 414543 - 415622 (-)
Gene ID: Rep_1106_c_4_381
Type: TC
Location: 415723 - 416559 (-)
Type: TC
Location: 415723 - 416559 (-)
Gene ID: Rep_1106_c_4_382
Type: TC
Location: 416562 - 417509 (-)
Type: TC
Location: 416562 - 417509 (-)
Gene ID: Rep_1106_c_4_383
Type: STP
Location: 417493 - 418809 (-)
Type: STP
Location: 417493 - 418809 (-)
Gene ID: Rep_1106_c_4_384
Type: pfam
Location: 419274 - 419927 (+)
Type: pfam
Location: 419274 - 419927 (+)
Gene ID: Rep_1106_c_4_385
Type: TC
Location: 419896 - 421674 (+)
Type: TC
Location: 419896 - 421674 (+)
Gene ID: Rep_1106_c_4_386
Type: TF
Location: 421671 - 423113 (+)
Type: TF
Location: 421671 - 423113 (+)
Gene ID: Rep_1106_c_4_387
Type: pfam
Location: 423184 - 424011 (-)
Type: pfam
Location: 423184 - 424011 (-)
Gene ID: Rep_1106_c_4_388
Type: CAZyme
Location: 424115 - 425221 (-)
Type: CAZyme
Location: 424115 - 425221 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_C
Species
Enterococcus_C asini
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.