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Cluster: Rep_1106_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1106_c_0 Rep_1106_c_0_132 134678 136195 + 3.A.1.1.9
pfam Rep_1106_c_0 Rep_1106_c_0_133 136512 137174 + DUF1961
pfam Rep_1106_c_0 Rep_1106_c_0_134 137177 137842 + DUF624
CAZyme Rep_1106_c_0 Rep_1106_c_0_135 137817 140312 + PL26
TC Rep_1106_c_0 Rep_1106_c_0_136 140312 141259 + 3.A.1.1.10
TC Rep_1106_c_0 Rep_1106_c_0_137 141272 142150 + 3.A.1.1.29
pfam Rep_1106_c_0 Rep_1106_c_0_138 142172 142987 + Polysacc_deac_1
TF Rep_1106_c_0 Rep_1106_c_0_139 143001 145208 + HTH_AraC
CAZyme Rep_1106_c_0 Rep_1106_c_0_140 145281 147920 + CE12 | GH42
pfam Rep_1106_c_0 Rep_1106_c_0_141 148222 148785 + AhpC-TSA | Redoxin | 1-cysPrx_C
STP Rep_1106_c_0 Rep_1106_c_0_142 148795 150321 + Pyr_redox_2
TC Rep_1106_c_0 Rep_1106_c_0_143 151090 152178 + 3.A.1.2.5
TC Rep_1106_c_0 Rep_1106_c_0_144 152241 153773 + 3.A.1.2.5
TC Rep_1106_c_0 Rep_1106_c_0_145 153774 154979 + 3.A.1.2.5
TC Rep_1106_c_0 Rep_1106_c_0_146 155017 155343 + 4.A.3.2.8
Gene ID: Rep_1106_c_0_132
Type: TC
Location: 134678 - 136195 (+)
Gene ID: Rep_1106_c_0_133
Type: pfam
Location: 136512 - 137174 (+)
Gene ID: Rep_1106_c_0_134
Type: pfam
Location: 137177 - 137842 (+)
Gene ID: Rep_1106_c_0_135
Type: CAZyme
Location: 137817 - 140312 (+)
Gene ID: Rep_1106_c_0_136
Type: TC
Location: 140312 - 141259 (+)
Gene ID: Rep_1106_c_0_137
Type: TC
Location: 141272 - 142150 (+)
Gene ID: Rep_1106_c_0_138
Type: pfam
Location: 142172 - 142987 (+)
Gene ID: Rep_1106_c_0_139
Type: TF
Location: 143001 - 145208 (+)
Gene ID: Rep_1106_c_0_140
Type: CAZyme
Location: 145281 - 147920 (+)
Gene ID: Rep_1106_c_0_141
Type: pfam
Location: 148222 - 148785 (+)
Gene ID: Rep_1106_c_0_142
Type: STP
Location: 148795 - 150321 (+)
Gene ID: Rep_1106_c_0_143
Type: TC
Location: 151090 - 152178 (+)
Gene ID: Rep_1106_c_0_144
Type: TC
Location: 152241 - 153773 (+)
Gene ID: Rep_1106_c_0_145
Type: TC
Location: 153774 - 154979 (+)
Gene ID: Rep_1106_c_0_146
Type: TC
Location: 155017 - 155343 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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