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Cluster: Rep_1106_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1106_c_16 Rep_1106_c_16_360 394359 395024 - CE12
TF Rep_1106_c_16 Rep_1106_c_16_361 395243 397453 + HTH_AraC | HTH_AraC
TC Rep_1106_c_16 Rep_1106_c_16_362 397540 398436 - 3.A.1.1.29
TC Rep_1106_c_16 Rep_1106_c_16_363 398788 399750 + 3.A.1.1.10
pfam Rep_1106_c_16 Rep_1106_c_16_364 399772 400380 + DUF624
CAZyme Rep_1106_c_16 Rep_1106_c_16_365 400405 401526 + GH105
CAZyme Rep_1106_c_16 Rep_1106_c_16_366 401519 402874 + GH28
peptidase Rep_1106_c_16 Rep_1106_c_16_367 402855 403736 + S09.UPW
pfam Rep_1106_c_16 Rep_1106_c_16_368 403778 404194 + DUF4064
CAZyme Rep_1106_c_16 Rep_1106_c_16_369 404175 405776 + CBM91 | GH43_11
TC Rep_1106_c_16 Rep_1106_c_16_370 405901 407406 + 3.A.1.1.9
Gene ID: Rep_1106_c_16_360
Type: CAZyme
Location: 394359 - 395024 (-)
Gene ID: Rep_1106_c_16_361
Type: TF
Location: 395243 - 397453 (+)
Gene ID: Rep_1106_c_16_362
Type: TC
Location: 397540 - 398436 (-)
Gene ID: Rep_1106_c_16_363
Type: TC
Location: 398788 - 399750 (+)
Gene ID: Rep_1106_c_16_364
Type: pfam
Location: 399772 - 400380 (+)
Gene ID: Rep_1106_c_16_365
Type: CAZyme
Location: 400405 - 401526 (+)
Gene ID: Rep_1106_c_16_366
Type: CAZyme
Location: 401519 - 402874 (+)
Gene ID: Rep_1106_c_16_367
Type: peptidase
Location: 402855 - 403736 (+)
Gene ID: Rep_1106_c_16_368
Type: pfam
Location: 403778 - 404194 (+)
Gene ID: Rep_1106_c_16_369
Type: CAZyme
Location: 404175 - 405776 (+)
Gene ID: Rep_1106_c_16_370
Type: TC
Location: 405901 - 407406 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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