dbCAN Logo

Cluster: Rep_1106_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1106_c_16 Rep_1106_c_16_133 146450 149080 + 3.A.3.2.21
TF Rep_1106_c_16 Rep_1106_c_16_134 149287 150720 + HTH_AraC
TC Rep_1106_c_16 Rep_1106_c_16_135 150862 152172 + 3.A.1.1.11
TC Rep_1106_c_16 Rep_1106_c_16_136 152186 153076 + 3.A.1.1.11
TC Rep_1106_c_16 Rep_1106_c_16_137 153079 153975 + 3.A.1.1.11
NULL(UNKNOWN) Rep_1106_c_16 Rep_1106_c_16_138 153987 154643 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1106_c_16 Rep_1106_c_16_139 154643 156223 + GH28
CAZyme Rep_1106_c_16 Rep_1106_c_16_140 156325 158358 + GH115
TC Rep_1106_c_16 Rep_1106_c_16_141 158445 160217 + 8.A.59.2.1
Gene ID: Rep_1106_c_16_133
Type: TC
Location: 146450 - 149080 (+)
Gene ID: Rep_1106_c_16_134
Type: TF
Location: 149287 - 150720 (+)
Gene ID: Rep_1106_c_16_135
Type: TC
Location: 150862 - 152172 (+)
Gene ID: Rep_1106_c_16_136
Type: TC
Location: 152186 - 153076 (+)
Gene ID: Rep_1106_c_16_137
Type: TC
Location: 153079 - 153975 (+)
Gene ID: Rep_1106_c_16_138
Type:
Location: 153987 - 154643 (+)
Gene ID: Rep_1106_c_16_139
Type: CAZyme
Location: 154643 - 156223 (+)
Gene ID: Rep_1106_c_16_140
Type: CAZyme
Location: 156325 - 158358 (+)
Gene ID: Rep_1106_c_16_141
Type: TC
Location: 158445 - 160217 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List