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Cluster: Rep_1106_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1106_c_0 Rep_1106_c_0_70 71430 72353 - CE8
CAZyme Rep_1106_c_0 Rep_1106_c_0_71 72363 73679 - GH28
TC Rep_1106_c_0 Rep_1106_c_0_72 74174 75520 + 3.A.1.1.11
TC Rep_1106_c_0 Rep_1106_c_0_73 75644 76525 + 3.A.1.1.11
TC Rep_1106_c_0 Rep_1106_c_0_74 76538 77395 + 3.A.1.1.11
pfam Rep_1106_c_0 Rep_1106_c_0_75 77401 77823 + RDD
CAZyme Rep_1106_c_0 Rep_1106_c_0_76 77885 79054 + GH105
TF Rep_1106_c_0 Rep_1106_c_0_77 79255 80139 + HTH_AraC | HTH_AraC
TF Rep_1106_c_0 Rep_1106_c_0_78 80180 81184 - LacI
TC Rep_1106_c_0 Rep_1106_c_0_79 81470 82726 + 3.A.1.1.2
TC Rep_1106_c_0 Rep_1106_c_0_80 82808 84094 + 3.A.1.1.2
TC Rep_1106_c_0 Rep_1106_c_0_81 84098 84955 + 3.A.1.1.2
CAZyme Rep_1106_c_0 Rep_1106_c_0_82 84962 87001 + GH42
Gene ID: Rep_1106_c_0_70
Type: CAZyme
Location: 71430 - 72353 (-)
Gene ID: Rep_1106_c_0_71
Type: CAZyme
Location: 72363 - 73679 (-)
Gene ID: Rep_1106_c_0_72
Type: TC
Location: 74174 - 75520 (+)
Gene ID: Rep_1106_c_0_73
Type: TC
Location: 75644 - 76525 (+)
Gene ID: Rep_1106_c_0_74
Type: TC
Location: 76538 - 77395 (+)
Gene ID: Rep_1106_c_0_75
Type: pfam
Location: 77401 - 77823 (+)
Gene ID: Rep_1106_c_0_76
Type: CAZyme
Location: 77885 - 79054 (+)
Gene ID: Rep_1106_c_0_77
Type: TF
Location: 79255 - 80139 (+)
Gene ID: Rep_1106_c_0_78
Type: TF
Location: 80180 - 81184 (-)
Gene ID: Rep_1106_c_0_79
Type: TC
Location: 81470 - 82726 (+)
Gene ID: Rep_1106_c_0_80
Type: TC
Location: 82808 - 84094 (+)
Gene ID: Rep_1106_c_0_81
Type: TC
Location: 84098 - 84955 (+)
Gene ID: Rep_1106_c_0_82
Type: CAZyme
Location: 84962 - 87001 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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