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Cluster: Rep_1106_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1106_c_11 Rep_1106_c_11_52 61149 62633 - GH32
TC Rep_1106_c_11 Rep_1106_c_11_53 62936 64897 + 4.A.1.2.12
CAZyme Rep_1106_c_11 Rep_1106_c_11_54 64887 66494 + GH13_31
CAZyme Rep_1106_c_11 Rep_1106_c_11_55 66538 68709 - GH36
TF Rep_1106_c_11 Rep_1106_c_11_56 68800 69591 + HTH_AraC | HTH_AraC
TF Rep_1106_c_11 Rep_1106_c_11_57 69737 70603 + HTH_AraC | HTH_AraC
TC Rep_1106_c_11 Rep_1106_c_11_58 70795 72258 + 2.A.3.7.6
pfam Rep_1106_c_11 Rep_1106_c_11_59 72396 72830 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
pfam Rep_1106_c_11 Rep_1106_c_11_60 72874 73833 - Ldh_1_N | Ldh_1_C
TC Rep_1106_c_11 Rep_1106_c_11_61 74115 74444 + 4.A.3.2.4
TC Rep_1106_c_11 Rep_1106_c_11_62 74449 74760 + 4.A.3.2.2
Gene ID: Rep_1106_c_11_52
Type: CAZyme
Location: 61149 - 62633 (-)
Gene ID: Rep_1106_c_11_53
Type: TC
Location: 62936 - 64897 (+)
Gene ID: Rep_1106_c_11_54
Type: CAZyme
Location: 64887 - 66494 (+)
Gene ID: Rep_1106_c_11_55
Type: CAZyme
Location: 66538 - 68709 (-)
Gene ID: Rep_1106_c_11_56
Type: TF
Location: 68800 - 69591 (+)
Gene ID: Rep_1106_c_11_57
Type: TF
Location: 69737 - 70603 (+)
Gene ID: Rep_1106_c_11_58
Type: TC
Location: 70795 - 72258 (+)
Gene ID: Rep_1106_c_11_59
Type: pfam
Location: 72396 - 72830 (+)
Gene ID: Rep_1106_c_11_60
Type: pfam
Location: 72874 - 73833 (-)
Gene ID: Rep_1106_c_11_61
Type: TC
Location: 74115 - 74444 (+)
Gene ID: Rep_1106_c_11_62
Type: TC
Location: 74449 - 74760 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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