Cluster: Rep_1102_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1102
- CGC Family ID: CGCFAM_01739
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1102_c_1 | Rep_1102_c_1_194 | 206965 | 207846 | + | GT32 |
| TC | Rep_1102_c_1 | Rep_1102_c_1_195 | 207848 | 209293 | + | 2.A.66.2.16 |
| pfam | Rep_1102_c_1 | Rep_1102_c_1_196 | 209307 | 210260 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | Rep_1102_c_1 | Rep_1102_c_1_197 | 210328 | 211278 | + | GT2 |
| pfam | Rep_1102_c_1 | Rep_1102_c_1_198 | 211370 | 213109 | + | YceG |
| pfam | Rep_1102_c_1 | Rep_1102_c_1_199 | 213205 | 213684 | + | GreA_GreB | GreA_GreB_N |
| TC | Rep_1102_c_1 | Rep_1102_c_1_200 | 213820 | 214542 | + | 9.B.116.1.1 |
| STP | Rep_1102_c_1 | Rep_1102_c_1_201 | 214539 | 215636 | + | HATPase_c |
| TF | Rep_1102_c_1 | Rep_1102_c_1_202 | 215670 | 216302 | + | GerE |
| TC | Rep_1102_c_1 | Rep_1102_c_1_203 | 216407 | 217072 | + | 2.A.38.4.4 |
| NULL(UNKNOWN) | Rep_1102_c_1 | Rep_1102_c_1_204 | 217085 | 217378 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1102_c_1 | Rep_1102_c_1_205 | 217390 | 218322 | + | GT2 |
Gene ID: Rep_1102_c_1_194
Type: CAZyme
Location: 206965 - 207846 (+)
Type: CAZyme
Location: 206965 - 207846 (+)
Gene ID: Rep_1102_c_1_195
Type: TC
Location: 207848 - 209293 (+)
Type: TC
Location: 207848 - 209293 (+)
Gene ID: Rep_1102_c_1_196
Type: pfam
Location: 209307 - 210260 (+)
Type: pfam
Location: 209307 - 210260 (+)
Gene ID: Rep_1102_c_1_197
Type: CAZyme
Location: 210328 - 211278 (+)
Type: CAZyme
Location: 210328 - 211278 (+)
Gene ID: Rep_1102_c_1_198
Type: pfam
Location: 211370 - 213109 (+)
Type: pfam
Location: 211370 - 213109 (+)
Gene ID: Rep_1102_c_1_199
Type: pfam
Location: 213205 - 213684 (+)
Type: pfam
Location: 213205 - 213684 (+)
Gene ID: Rep_1102_c_1_200
Type: TC
Location: 213820 - 214542 (+)
Type: TC
Location: 213820 - 214542 (+)
Gene ID: Rep_1102_c_1_201
Type: STP
Location: 214539 - 215636 (+)
Type: STP
Location: 214539 - 215636 (+)
Gene ID: Rep_1102_c_1_202
Type: TF
Location: 215670 - 216302 (+)
Type: TF
Location: 215670 - 216302 (+)
Gene ID: Rep_1102_c_1_203
Type: TC
Location: 216407 - 217072 (+)
Type: TC
Location: 216407 - 217072 (+)
Gene ID: Rep_1102_c_1_204
Type:
Location: 217085 - 217378 (+)
Type:
Location: 217085 - 217378 (+)
Gene ID: Rep_1102_c_1_205
Type: CAZyme
Location: 217390 - 218322 (+)
Type: CAZyme
Location: 217390 - 218322 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_A
Species
Enterococcus_A raffinosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.