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Cluster: Rep_1102_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1102_c_25 Rep_1102_c_25_1 3 761 - 4.A.1.2.12
CAZyme Rep_1102_c_25 Rep_1102_c_25_2 1035 2534 + GH32
TF Rep_1102_c_25 Rep_1102_c_25_3 2551 3534 + LacI
NULL(UNKNOWN) Rep_1102_c_25 Rep_1102_c_25_4 3580 4014 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1102_c_25 Rep_1102_c_25_5 4274 5326 - 3.A.1.2.12
TF Rep_1102_c_25 Rep_1102_c_25_6 5484 6167 - 0037767
STP Rep_1102_c_25 Rep_1102_c_25_7 6362 7291 + SBP_bac_3
TC Rep_1102_c_25 Rep_1102_c_25_8 7351 8142 + 3.A.1.9.1
TC Rep_1102_c_25 Rep_1102_c_25_9 8114 8893 + 3.A.1.9.1
TC Rep_1102_c_25 Rep_1102_c_25_10 8890 9672 + 3.A.1.9.1
Gene ID: Rep_1102_c_25_1
Type: TC
Location: 3 - 761 (-)
Gene ID: Rep_1102_c_25_2
Type: CAZyme
Location: 1035 - 2534 (+)
Gene ID: Rep_1102_c_25_3
Type: TF
Location: 2551 - 3534 (+)
Gene ID: Rep_1102_c_25_4
Type:
Location: 3580 - 4014 (-)
Gene ID: Rep_1102_c_25_5
Type: TC
Location: 4274 - 5326 (-)
Gene ID: Rep_1102_c_25_6
Type: TF
Location: 5484 - 6167 (-)
Gene ID: Rep_1102_c_25_7
Type: STP
Location: 6362 - 7291 (+)
Gene ID: Rep_1102_c_25_8
Type: TC
Location: 7351 - 8142 (+)
Gene ID: Rep_1102_c_25_9
Type: TC
Location: 8114 - 8893 (+)
Gene ID: Rep_1102_c_25_10
Type: TC
Location: 8890 - 9672 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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