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Cluster: Rep_1102_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1102_c_23 Rep_1102_c_23_2 801 2486 + GH3
CAZyme Rep_1102_c_23 Rep_1102_c_23_3 2505 5330 + CBM67 | GH78
pfam Rep_1102_c_23 Rep_1102_c_23_4 5323 5979 + Hydrolase | HAD_2
CAZyme Rep_1102_c_23 Rep_1102_c_23_5 5995 7539 + CBM91 | GH43_12
pfam Rep_1102_c_23 Rep_1102_c_23_6 7583 8446 - ROK
CAZyme Rep_1102_c_23 Rep_1102_c_23_7 8457 9827 - GH1
TF Rep_1102_c_23 Rep_1102_c_23_8 9839 10630 - HTH_6
CAZyme Rep_1102_c_23 Rep_1102_c_23_9 10642 13263 - GH38
TC Rep_1102_c_23 Rep_1102_c_23_10 13313 13768 - 4.A.2.1.8
TC Rep_1102_c_23 Rep_1102_c_23_11 13782 15314 - 4.A.2.1.6
peptidase Rep_1102_c_23 Rep_1102_c_23_12 15595 16542 + S09.UPC
pfam Rep_1102_c_23 Rep_1102_c_23_13 16598 16921 - PTS_IIB
TC Rep_1102_c_23 Rep_1102_c_23_14 16933 18138 - 3.A.1.2.5
TC Rep_1102_c_23 Rep_1102_c_23_15 18138 19670 - 3.A.1.2.22
TC Rep_1102_c_23 Rep_1102_c_23_16 19740 20831 - 3.A.1.2.5
TC Rep_1102_c_23 Rep_1102_c_23_17 21055 21534 + 3.A.1.2.14
NULL(UNKNOWN) Rep_1102_c_23 Rep_1102_c_23_18 21747 22019 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1102_c_23 Rep_1102_c_23_19 22029 23474 + 9.B.33.1.1
Gene ID: Rep_1102_c_23_2
Type: CAZyme
Location: 801 - 2486 (+)
Gene ID: Rep_1102_c_23_3
Type: CAZyme
Location: 2505 - 5330 (+)
Gene ID: Rep_1102_c_23_4
Type: pfam
Location: 5323 - 5979 (+)
Gene ID: Rep_1102_c_23_5
Type: CAZyme
Location: 5995 - 7539 (+)
Gene ID: Rep_1102_c_23_6
Type: pfam
Location: 7583 - 8446 (-)
Gene ID: Rep_1102_c_23_7
Type: CAZyme
Location: 8457 - 9827 (-)
Gene ID: Rep_1102_c_23_8
Type: TF
Location: 9839 - 10630 (-)
Gene ID: Rep_1102_c_23_9
Type: CAZyme
Location: 10642 - 13263 (-)
Gene ID: Rep_1102_c_23_10
Type: TC
Location: 13313 - 13768 (-)
Gene ID: Rep_1102_c_23_11
Type: TC
Location: 13782 - 15314 (-)
Gene ID: Rep_1102_c_23_12
Type: peptidase
Location: 15595 - 16542 (+)
Gene ID: Rep_1102_c_23_13
Type: pfam
Location: 16598 - 16921 (-)
Gene ID: Rep_1102_c_23_14
Type: TC
Location: 16933 - 18138 (-)
Gene ID: Rep_1102_c_23_15
Type: TC
Location: 18138 - 19670 (-)
Gene ID: Rep_1102_c_23_16
Type: TC
Location: 19740 - 20831 (-)
Gene ID: Rep_1102_c_23_17
Type: TC
Location: 21055 - 21534 (+)
Gene ID: Rep_1102_c_23_18
Type:
Location: 21747 - 22019 (+)
Gene ID: Rep_1102_c_23_19
Type: TC
Location: 22029 - 23474 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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