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Cluster: Rep_1102_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1102_c_19 Rep_1102_c_19_46 49238 50278 + GT4
TC Rep_1102_c_19 Rep_1102_c_19_47 50291 50977 + 8.A.3.2.1
pfam Rep_1102_c_19 Rep_1102_c_19_48 51013 52221 + PS_pyruv_trans
pfam Rep_1102_c_19 Rep_1102_c_19_49 52218 53636 + Polysacc_synt
CAZyme Rep_1102_c_19 Rep_1102_c_19_50 53633 54358 + GT26
CAZyme Rep_1102_c_19 Rep_1102_c_19_51 54355 55605 + GT4
TF Rep_1102_c_19 Rep_1102_c_19_52 55602 56318 + Trans_reg_C
TC Rep_1102_c_19 Rep_1102_c_19_53 56565 57248 + 9.B.18.1.2
pfam Rep_1102_c_19 Rep_1102_c_19_54 57284 58057 + Wzz
TC Rep_1102_c_19 Rep_1102_c_19_55 58079 58762 + 8.A.3.2.1
Gene ID: Rep_1102_c_19_46
Type: CAZyme
Location: 49238 - 50278 (+)
Gene ID: Rep_1102_c_19_47
Type: TC
Location: 50291 - 50977 (+)
Gene ID: Rep_1102_c_19_48
Type: pfam
Location: 51013 - 52221 (+)
Gene ID: Rep_1102_c_19_49
Type: pfam
Location: 52218 - 53636 (+)
Gene ID: Rep_1102_c_19_50
Type: CAZyme
Location: 53633 - 54358 (+)
Gene ID: Rep_1102_c_19_51
Type: CAZyme
Location: 54355 - 55605 (+)
Gene ID: Rep_1102_c_19_52
Type: TF
Location: 55602 - 56318 (+)
Gene ID: Rep_1102_c_19_53
Type: TC
Location: 56565 - 57248 (+)
Gene ID: Rep_1102_c_19_54
Type: pfam
Location: 57284 - 58057 (+)
Gene ID: Rep_1102_c_19_55
Type: TC
Location: 58079 - 58762 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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