Cluster: Rep_1102_CGC39
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1102
- CGC Family ID: CGCFAM_05266
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1102_c_17 | Rep_1102_c_17_4 | 2742 | 5417 | - | GH38 |
| TC | Rep_1102_c_17 | Rep_1102_c_17_5 | 5495 | 6598 | - | 4.A.2.1.8 |
| TC | Rep_1102_c_17 | Rep_1102_c_17_6 | 6619 | 6942 | - | 4.A.2.1.10 |
| TC | Rep_1102_c_17 | Rep_1102_c_17_7 | 6939 | 7400 | - | 4.A.2.1.8 |
| TF | Rep_1102_c_17 | Rep_1102_c_17_8 | 7769 | 9703 | + | HTH_11 | Mga |
| NULL(UNKNOWN) | Rep_1102_c_17 | Rep_1102_c_17_9 | 10028 | 10594 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1102_c_17 | Rep_1102_c_17_10 | 10643 | 11869 | - | GT1 |
Gene ID: Rep_1102_c_17_4
Type: CAZyme
Location: 2742 - 5417 (-)
Type: CAZyme
Location: 2742 - 5417 (-)
Gene ID: Rep_1102_c_17_5
Type: TC
Location: 5495 - 6598 (-)
Type: TC
Location: 5495 - 6598 (-)
Gene ID: Rep_1102_c_17_6
Type: TC
Location: 6619 - 6942 (-)
Type: TC
Location: 6619 - 6942 (-)
Gene ID: Rep_1102_c_17_7
Type: TC
Location: 6939 - 7400 (-)
Type: TC
Location: 6939 - 7400 (-)
Gene ID: Rep_1102_c_17_8
Type: TF
Location: 7769 - 9703 (+)
Type: TF
Location: 7769 - 9703 (+)
Gene ID: Rep_1102_c_17_9
Type:
Location: 10028 - 10594 (+)
Type:
Location: 10028 - 10594 (+)
Gene ID: Rep_1102_c_17_10
Type: CAZyme
Location: 10643 - 11869 (-)
Type: CAZyme
Location: 10643 - 11869 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_A
Species
Enterococcus_A raffinosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.