Cluster: Rep_1102_CGC35
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_1102
- CGC Family ID: CGCFAM_00585
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1102_c_14 | Rep_1102_c_14_62 | 55874 | 56983 | - | 3.A.1.1.20 |
| TC | Rep_1102_c_14 | Rep_1102_c_14_63 | 57241 | 58185 | + | 3.A.1.1.10 |
| TC | Rep_1102_c_14 | Rep_1102_c_14_64 | 58196 | 59119 | + | 3.A.1.1.29 |
| STP | Rep_1102_c_14 | Rep_1102_c_14_65 | 59143 | 60603 | + | SBP_bac_1 |
| pfam | Rep_1102_c_14 | Rep_1102_c_14_66 | 60829 | 61443 | + | DUF624 |
| TC | Rep_1102_c_14 | Rep_1102_c_14_67 | 61457 | 63166 | + | 8.A.59.2.1 |
| TF | Rep_1102_c_14 | Rep_1102_c_14_68 | 63156 | 64661 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_1102_c_14 | Rep_1102_c_14_69 | 64722 | 66863 | - | GH92 |
| TF | Rep_1102_c_14 | Rep_1102_c_14_70 | 66856 | 67896 | - | GntR |
| CAZyme | Rep_1102_c_14 | Rep_1102_c_14_71 | 68052 | 69341 | + | GH125 |
| CAZyme | Rep_1102_c_14 | Rep_1102_c_14_72 | 69358 | 72030 | + | GH38 |
| pfam | Rep_1102_c_14 | Rep_1102_c_14_73 | 72035 | 72895 | + | ROK |
| CAZyme | Rep_1102_c_14 | Rep_1102_c_14_74 | 72955 | 74268 | + | GH20 |
Gene ID: Rep_1102_c_14_62
Type: TC
Location: 55874 - 56983 (-)
Type: TC
Location: 55874 - 56983 (-)
Gene ID: Rep_1102_c_14_63
Type: TC
Location: 57241 - 58185 (+)
Type: TC
Location: 57241 - 58185 (+)
Gene ID: Rep_1102_c_14_64
Type: TC
Location: 58196 - 59119 (+)
Type: TC
Location: 58196 - 59119 (+)
Gene ID: Rep_1102_c_14_65
Type: STP
Location: 59143 - 60603 (+)
Type: STP
Location: 59143 - 60603 (+)
Gene ID: Rep_1102_c_14_66
Type: pfam
Location: 60829 - 61443 (+)
Type: pfam
Location: 60829 - 61443 (+)
Gene ID: Rep_1102_c_14_67
Type: TC
Location: 61457 - 63166 (+)
Type: TC
Location: 61457 - 63166 (+)
Gene ID: Rep_1102_c_14_68
Type: TF
Location: 63156 - 64661 (+)
Type: TF
Location: 63156 - 64661 (+)
Gene ID: Rep_1102_c_14_69
Type: CAZyme
Location: 64722 - 66863 (-)
Type: CAZyme
Location: 64722 - 66863 (-)
Gene ID: Rep_1102_c_14_70
Type: TF
Location: 66856 - 67896 (-)
Type: TF
Location: 66856 - 67896 (-)
Gene ID: Rep_1102_c_14_71
Type: CAZyme
Location: 68052 - 69341 (+)
Type: CAZyme
Location: 68052 - 69341 (+)
Gene ID: Rep_1102_c_14_72
Type: CAZyme
Location: 69358 - 72030 (+)
Type: CAZyme
Location: 69358 - 72030 (+)
Gene ID: Rep_1102_c_14_73
Type: pfam
Location: 72035 - 72895 (+)
Type: pfam
Location: 72035 - 72895 (+)
Gene ID: Rep_1102_c_14_74
Type: CAZyme
Location: 72955 - 74268 (+)
Type: CAZyme
Location: 72955 - 74268 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_A
Species
Enterococcus_A raffinosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.