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Cluster: Rep_1102_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1102_c_11 Rep_1102_c_11_86 83982 85268 + 2.A.1.11.1
TF Rep_1102_c_11 Rep_1102_c_11_87 85321 87240 - HTH_11 | Mga
TC Rep_1102_c_11 Rep_1102_c_11_88 87418 87732 + 4.A.3.2.3
TC Rep_1102_c_11 Rep_1102_c_11_89 87751 89019 + 4.A.3.2.6
TC Rep_1102_c_11 Rep_1102_c_11_90 89091 89438 + 4.A.3.2.2
pfam Rep_1102_c_11 Rep_1102_c_11_91 89450 90238 + His_Phos_1 | His_Phos_1
CAZyme Rep_1102_c_11 Rep_1102_c_11_92 90319 91656 + GH1
pfam Rep_1102_c_11 Rep_1102_c_11_93 91758 92351 + YitT_membrane
TF Rep_1102_c_11 Rep_1102_c_11_94 92485 92919 + MarR
TC Rep_1102_c_11 Rep_1102_c_11_95 92923 94302 + 2.A.66.1.32
NULL(UNKNOWN) Rep_1102_c_11 Rep_1102_c_11_96 94447 94782 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_1102_c_11 Rep_1102_c_11_97 94842 95270 + MarR
TC Rep_1102_c_11 Rep_1102_c_11_98 95372 97138 + 3.A.1.135.6
TC Rep_1102_c_11 Rep_1102_c_11_99 97131 98915 + 3.A.1.135.6
Gene ID: Rep_1102_c_11_86
Type: TC
Location: 83982 - 85268 (+)
Gene ID: Rep_1102_c_11_87
Type: TF
Location: 85321 - 87240 (-)
Gene ID: Rep_1102_c_11_88
Type: TC
Location: 87418 - 87732 (+)
Gene ID: Rep_1102_c_11_89
Type: TC
Location: 87751 - 89019 (+)
Gene ID: Rep_1102_c_11_90
Type: TC
Location: 89091 - 89438 (+)
Gene ID: Rep_1102_c_11_91
Type: pfam
Location: 89450 - 90238 (+)
Gene ID: Rep_1102_c_11_92
Type: CAZyme
Location: 90319 - 91656 (+)
Gene ID: Rep_1102_c_11_93
Type: pfam
Location: 91758 - 92351 (+)
Gene ID: Rep_1102_c_11_94
Type: TF
Location: 92485 - 92919 (+)
Gene ID: Rep_1102_c_11_95
Type: TC
Location: 92923 - 94302 (+)
Gene ID: Rep_1102_c_11_96
Type:
Location: 94447 - 94782 (+)
Gene ID: Rep_1102_c_11_97
Type: TF
Location: 94842 - 95270 (+)
Gene ID: Rep_1102_c_11_98
Type: TC
Location: 95372 - 97138 (+)
Gene ID: Rep_1102_c_11_99
Type: TC
Location: 97131 - 98915 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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