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Cluster: Rep_1102_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1102_c_0 Rep_1102_c_0_286 286536 288158 - GH13_31
CAZyme Rep_1102_c_0 Rep_1102_c_0_287 288161 289786 - GH13_31
CAZyme Rep_1102_c_0 Rep_1102_c_0_288 289832 291598 - CBM34 | GH13_20
TC Rep_1102_c_0 Rep_1102_c_0_289 291613 292716 - 3.A.1.1.28
TC Rep_1102_c_0 Rep_1102_c_0_290 293048 294304 + 3.A.1.1.27
TC Rep_1102_c_0 Rep_1102_c_0_291 294400 295761 + 3.A.1.1.27
TC Rep_1102_c_0 Rep_1102_c_0_292 295761 296600 + 3.A.1.1.27
TC Rep_1102_c_0 Rep_1102_c_0_293 296755 297660 + 1.A.35.3.4
Gene ID: Rep_1102_c_0_286
Type: CAZyme
Location: 286536 - 288158 (-)
Gene ID: Rep_1102_c_0_287
Type: CAZyme
Location: 288161 - 289786 (-)
Gene ID: Rep_1102_c_0_288
Type: CAZyme
Location: 289832 - 291598 (-)
Gene ID: Rep_1102_c_0_289
Type: TC
Location: 291613 - 292716 (-)
Gene ID: Rep_1102_c_0_290
Type: TC
Location: 293048 - 294304 (+)
Gene ID: Rep_1102_c_0_291
Type: TC
Location: 294400 - 295761 (+)
Gene ID: Rep_1102_c_0_292
Type: TC
Location: 295761 - 296600 (+)
Gene ID: Rep_1102_c_0_293
Type: TC
Location: 296755 - 297660 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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