Cluster: Rep_1102_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: Rep_1102
- CGC Family ID: CGCFAM_00014
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1102_c_5 | Rep_1102_c_5_107 | 104721 | 106121 | + | GH1 |
| TC | Rep_1102_c_5 | Rep_1102_c_5_108 | 106209 | 106529 | + | 4.A.3.1.2 |
| TC | Rep_1102_c_5 | Rep_1102_c_5_109 | 106551 | 108218 | + | 4.A.3.1.1 |
| TF | Rep_1102_c_5 | Rep_1102_c_5_110 | 108260 | 108997 | + | HTH_DeoR |
| TC | Rep_1102_c_5 | Rep_1102_c_5_111 | 109048 | 110508 | - | 4.A.5.1.6 |
| pfam | Rep_1102_c_5 | Rep_1102_c_5_112 | 110530 | 110832 | - | PTS_IIB |
| TC | Rep_1102_c_5 | Rep_1102_c_5_113 | 110877 | 111368 | - | 4.A.5.1.6 |
Gene ID: Rep_1102_c_5_107
Type: CAZyme
Location: 104721 - 106121 (+)
Type: CAZyme
Location: 104721 - 106121 (+)
Gene ID: Rep_1102_c_5_108
Type: TC
Location: 106209 - 106529 (+)
Type: TC
Location: 106209 - 106529 (+)
Gene ID: Rep_1102_c_5_109
Type: TC
Location: 106551 - 108218 (+)
Type: TC
Location: 106551 - 108218 (+)
Gene ID: Rep_1102_c_5_110
Type: TF
Location: 108260 - 108997 (+)
Type: TF
Location: 108260 - 108997 (+)
Gene ID: Rep_1102_c_5_111
Type: TC
Location: 109048 - 110508 (-)
Type: TC
Location: 109048 - 110508 (-)
Gene ID: Rep_1102_c_5_112
Type: pfam
Location: 110530 - 110832 (-)
Type: pfam
Location: 110530 - 110832 (-)
Gene ID: Rep_1102_c_5_113
Type: TC
Location: 110877 - 111368 (-)
Type: TC
Location: 110877 - 111368 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_A
Species
Enterococcus_A raffinosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.