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Cluster: Rep_1102_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1102_c_2 Rep_1102_c_2_36 36098 36886 + 8.A.3.2.4
TC Rep_1102_c_2 Rep_1102_c_2_37 36900 37658 + 8.A.3.2.1
pfam Rep_1102_c_2 Rep_1102_c_2_38 37670 38413 + CpsB_CapC
TC Rep_1102_c_2 Rep_1102_c_2_39 38459 39175 + 9.B.18.1.2
pfam Rep_1102_c_2 Rep_1102_c_2_40 39194 39643 + Alg14
CAZyme Rep_1102_c_2 Rep_1102_c_2_41 39643 40137 + GT1
pfam Rep_1102_c_2 Rep_1102_c_2_42 40151 40720 + Hexapep
CAZyme Rep_1102_c_2 Rep_1102_c_2_43 40717 41478 + GT32
Gene ID: Rep_1102_c_2_36
Type: TC
Location: 36098 - 36886 (+)
Gene ID: Rep_1102_c_2_37
Type: TC
Location: 36900 - 37658 (+)
Gene ID: Rep_1102_c_2_38
Type: pfam
Location: 37670 - 38413 (+)
Gene ID: Rep_1102_c_2_39
Type: TC
Location: 38459 - 39175 (+)
Gene ID: Rep_1102_c_2_40
Type: pfam
Location: 39194 - 39643 (+)
Gene ID: Rep_1102_c_2_41
Type: CAZyme
Location: 39643 - 40137 (+)
Gene ID: Rep_1102_c_2_42
Type: pfam
Location: 40151 - 40720 (+)
Gene ID: Rep_1102_c_2_43
Type: CAZyme
Location: 40717 - 41478 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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