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Cluster: Rep_1102_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1102_c_0 Rep_1102_c_0_53 49249 49578 + 4.A.3.2.8
CAZyme Rep_1102_c_0 Rep_1102_c_0_54 49578 50972 + GH1
TC Rep_1102_c_0 Rep_1102_c_0_55 51016 51306 + 4.A.3.2.2
TC Rep_1102_c_0 Rep_1102_c_0_56 51313 52617 + 4.A.3.2.6
TF Rep_1102_c_0 Rep_1102_c_0_57 52701 54557 + HTH_11 | Mga
TC Rep_1102_c_0 Rep_1102_c_0_58 54615 55790 - 2.A.41.1.2
TF Rep_1102_c_0 Rep_1102_c_0_59 56254 56892 + GntR
TC Rep_1102_c_0 Rep_1102_c_0_60 57114 58313 + 3.A.1.12.5
TC Rep_1102_c_0 Rep_1102_c_0_61 58306 60030 + 3.A.1.12.5
TF Rep_1102_c_0 Rep_1102_c_0_62 60350 62293 + HTH_11 | Mga
pfam Rep_1102_c_0 Rep_1102_c_0_63 62294 62767 + PTS_EIIA_2
TC Rep_1102_c_0 Rep_1102_c_0_64 62781 63065 + 4.A.5.1.3
TC Rep_1102_c_0 Rep_1102_c_0_65 63104 64477 + 4.A.5.1.4
Gene ID: Rep_1102_c_0_53
Type: TC
Location: 49249 - 49578 (+)
Gene ID: Rep_1102_c_0_54
Type: CAZyme
Location: 49578 - 50972 (+)
Gene ID: Rep_1102_c_0_55
Type: TC
Location: 51016 - 51306 (+)
Gene ID: Rep_1102_c_0_56
Type: TC
Location: 51313 - 52617 (+)
Gene ID: Rep_1102_c_0_57
Type: TF
Location: 52701 - 54557 (+)
Gene ID: Rep_1102_c_0_58
Type: TC
Location: 54615 - 55790 (-)
Gene ID: Rep_1102_c_0_59
Type: TF
Location: 56254 - 56892 (+)
Gene ID: Rep_1102_c_0_60
Type: TC
Location: 57114 - 58313 (+)
Gene ID: Rep_1102_c_0_61
Type: TC
Location: 58306 - 60030 (+)
Gene ID: Rep_1102_c_0_62
Type: TF
Location: 60350 - 62293 (+)
Gene ID: Rep_1102_c_0_63
Type: pfam
Location: 62294 - 62767 (+)
Gene ID: Rep_1102_c_0_64
Type: TC
Location: 62781 - 63065 (+)
Gene ID: Rep_1102_c_0_65
Type: TC
Location: 63104 - 64477 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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