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Cluster: Rep_10_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_10_c_137 Rep_10_c_137_13 8953 9288 + 1.E.40.4.3
pfam Rep_10_c_137 Rep_10_c_137_14 9340 10212 - SDH_alpha
STP Rep_10_c_137 Rep_10_c_137_15 10222 10887 - ACT
TC Rep_10_c_137 Rep_10_c_137_16 10897 12240 - 2.A.66.1.33
pfam Rep_10_c_137 Rep_10_c_137_17 12478 14607 - Ribonuc_red_lgC | ATP-cone
CAZyme Rep_10_c_137 Rep_10_c_137_18 14762 15322 - GH73
peptidase Rep_10_c_137 Rep_10_c_137_19 15426 17192 + M03.UPW
pfam Rep_10_c_137 Rep_10_c_137_20 17194 18081 + Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
TC Rep_10_c_137 Rep_10_c_137_21 18068 19375 + 2.A.23.1.5
Gene ID: Rep_10_c_137_13
Type: TC
Location: 8953 - 9288 (+)
Gene ID: Rep_10_c_137_14
Type: pfam
Location: 9340 - 10212 (-)
Gene ID: Rep_10_c_137_15
Type: STP
Location: 10222 - 10887 (-)
Gene ID: Rep_10_c_137_16
Type: TC
Location: 10897 - 12240 (-)
Gene ID: Rep_10_c_137_17
Type: pfam
Location: 12478 - 14607 (-)
Gene ID: Rep_10_c_137_18
Type: CAZyme
Location: 14762 - 15322 (-)
Gene ID: Rep_10_c_137_19
Type: peptidase
Location: 15426 - 17192 (+)
Gene ID: Rep_10_c_137_20
Type: pfam
Location: 17194 - 18081 (+)
Gene ID: Rep_10_c_137_21
Type: TC
Location: 18068 - 19375 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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