Cluster: Rep_1093_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_1093
- CGC Family ID: CGCFAM_00008
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1093_c_5 | Rep_1093_c_5_57 | 59216 | 60619 | - | 9.B.18.1.1 |
| CAZyme | Rep_1093_c_5 | Rep_1093_c_5_58 | 60668 | 61525 | - | GT2 |
| CAZyme | Rep_1093_c_5 | Rep_1093_c_5_59 | 61541 | 62506 | - | GT2 |
| CAZyme | Rep_1093_c_5 | Rep_1093_c_5_60 | 62512 | 63474 | - | GT2 |
| pfam | Rep_1093_c_5 | Rep_1093_c_5_61 | 63467 | 64561 | - | Glyphos_transf |
| TC | Rep_1093_c_5 | Rep_1093_c_5_62 | 64564 | 66324 | - | 3.A.1.103.1 |
| TC | Rep_1093_c_5 | Rep_1093_c_5_63 | 66339 | 67124 | - | 3.A.1.103.6 |
| CAZyme | Rep_1093_c_5 | Rep_1093_c_5_64 | 67257 | 68291 | - | GT2 |
| CAZyme | Rep_1093_c_5 | Rep_1093_c_5_65 | 68293 | 69339 | - | GT2 |
| CAZyme | Rep_1093_c_5 | Rep_1093_c_5_66 | 69329 | 70837 | - | GT4 |
| CAZyme | Rep_1093_c_5 | Rep_1093_c_5_67 | 70834 | 72435 | - | GT2 |
| CAZyme | Rep_1093_c_5 | Rep_1093_c_5_68 | 72428 | 73468 | - | GT116 |
Gene ID: Rep_1093_c_5_57
Type: TC
Location: 59216 - 60619 (-)
Type: TC
Location: 59216 - 60619 (-)
Gene ID: Rep_1093_c_5_58
Type: CAZyme
Location: 60668 - 61525 (-)
Type: CAZyme
Location: 60668 - 61525 (-)
Gene ID: Rep_1093_c_5_59
Type: CAZyme
Location: 61541 - 62506 (-)
Type: CAZyme
Location: 61541 - 62506 (-)
Gene ID: Rep_1093_c_5_60
Type: CAZyme
Location: 62512 - 63474 (-)
Type: CAZyme
Location: 62512 - 63474 (-)
Gene ID: Rep_1093_c_5_61
Type: pfam
Location: 63467 - 64561 (-)
Type: pfam
Location: 63467 - 64561 (-)
Gene ID: Rep_1093_c_5_62
Type: TC
Location: 64564 - 66324 (-)
Type: TC
Location: 64564 - 66324 (-)
Gene ID: Rep_1093_c_5_63
Type: TC
Location: 66339 - 67124 (-)
Type: TC
Location: 66339 - 67124 (-)
Gene ID: Rep_1093_c_5_64
Type: CAZyme
Location: 67257 - 68291 (-)
Type: CAZyme
Location: 67257 - 68291 (-)
Gene ID: Rep_1093_c_5_65
Type: CAZyme
Location: 68293 - 69339 (-)
Type: CAZyme
Location: 68293 - 69339 (-)
Gene ID: Rep_1093_c_5_66
Type: CAZyme
Location: 69329 - 70837 (-)
Type: CAZyme
Location: 69329 - 70837 (-)
Gene ID: Rep_1093_c_5_67
Type: CAZyme
Location: 70834 - 72435 (-)
Type: CAZyme
Location: 70834 - 72435 (-)
Gene ID: Rep_1093_c_5_68
Type: CAZyme
Location: 72428 - 73468 (-)
Type: CAZyme
Location: 72428 - 73468 (-)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanobrevibacter_A
Species
Methanobrevibacter_A smithii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1093_c_5_58 | vegan > omnivore | 22.06043 | 0.00565 |
| Rep_1093_c_5_58 | vegetarian > omnivore | 22.05941 | 0.00000 |
| Rep_1093_c_5_59 | vegan > omnivore | 21.17711 | 0.00565 |
| Rep_1093_c_5_59 | vegetarian > omnivore | 21.30340 | 0.00000 |
| Rep_1093_c_5_60 | vegan > omnivore | 19.89569 | 0.00565 |
| Rep_1093_c_5_61 | vegan > omnivore | 19.83377 | 0.00565 |
| Rep_1093_c_5_63 | vegan > omnivore | 1.43984 | 0.00565 |
| Rep_1093_c_5_66 | vegan > omnivore | 1.19075 | 0.00565 |
| Rep_1093_c_5_67 | vegan > omnivore | 20.83939 | 0.00565 |
| Rep_1093_c_5_67 | vegetarian > omnivore | 21.83666 | 0.00000 |