Cluster: Rep_1093_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1093
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1093_c_0 | Rep_1093_c_0_400 | 446772 | 447437 | + | 3.A.1.23.8 |
| TC | Rep_1093_c_0 | Rep_1093_c_0_401 | 447447 | 447737 | + | 3.A.1.23.8 |
| pfam | Rep_1093_c_0 | Rep_1093_c_0_402 | 447771 | 448463 | + | CbiQ |
| TC | Rep_1093_c_0 | Rep_1093_c_0_403 | 448470 | 449306 | + | 3.A.1.23.2 |
| pfam | Rep_1093_c_0 | Rep_1093_c_0_404 | 449355 | 449813 | + | DMRL_synthase |
| CAZyme | Rep_1093_c_0 | Rep_1093_c_0_405 | 449827 | 450549 | + | GT2 |
Gene ID: Rep_1093_c_0_400
Type: TC
Location: 446772 - 447437 (+)
Type: TC
Location: 446772 - 447437 (+)
Gene ID: Rep_1093_c_0_401
Type: TC
Location: 447447 - 447737 (+)
Type: TC
Location: 447447 - 447737 (+)
Gene ID: Rep_1093_c_0_402
Type: pfam
Location: 447771 - 448463 (+)
Type: pfam
Location: 447771 - 448463 (+)
Gene ID: Rep_1093_c_0_403
Type: TC
Location: 448470 - 449306 (+)
Type: TC
Location: 448470 - 449306 (+)
Gene ID: Rep_1093_c_0_404
Type: pfam
Location: 449355 - 449813 (+)
Type: pfam
Location: 449355 - 449813 (+)
Gene ID: Rep_1093_c_0_405
Type: CAZyme
Location: 449827 - 450549 (+)
Type: CAZyme
Location: 449827 - 450549 (+)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanobrevibacter_A
Species
Methanobrevibacter_A smithii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1093_c_0_401 | vegan > omnivore | 19.85304 | 0.00565 |
| Rep_1093_c_0_403 | vegan > omnivore | 4.05092 | 0.00565 |
| Rep_1093_c_0_405 | vegan > omnivore | 1.73218 | 0.00565 |