Cluster: Rep_1093_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1093
- CGC Family ID: CGCFAM_00074
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1093_c_0 | Rep_1093_c_0_376 | 415625 | 416701 | - | 3.A.1.103.1 |
| pfam | Rep_1093_c_0 | Rep_1093_c_0_377 | 416712 | 417491 | - | ABC2_membrane |
| CAZyme | Rep_1093_c_0 | Rep_1093_c_0_378 | 417570 | 421151 | + | GT2 | GT2 |
| pfam | Rep_1093_c_0 | Rep_1093_c_0_379 | 421169 | 422209 | + | Methyltransf_21 |
| CAZyme | Rep_1093_c_0 | Rep_1093_c_0_380 | 422438 | 423628 | + | GT2 |
| CAZyme | Rep_1093_c_0 | Rep_1093_c_0_381 | 423641 | 428395 | + | GT2 | GT2 | GT2 | GT4 |
Gene ID: Rep_1093_c_0_376
Type: TC
Location: 415625 - 416701 (-)
Type: TC
Location: 415625 - 416701 (-)
Gene ID: Rep_1093_c_0_377
Type: pfam
Location: 416712 - 417491 (-)
Type: pfam
Location: 416712 - 417491 (-)
Gene ID: Rep_1093_c_0_378
Type: CAZyme
Location: 417570 - 421151 (+)
Type: CAZyme
Location: 417570 - 421151 (+)
Gene ID: Rep_1093_c_0_379
Type: pfam
Location: 421169 - 422209 (+)
Type: pfam
Location: 421169 - 422209 (+)
Gene ID: Rep_1093_c_0_380
Type: CAZyme
Location: 422438 - 423628 (+)
Type: CAZyme
Location: 422438 - 423628 (+)
Gene ID: Rep_1093_c_0_381
Type: CAZyme
Location: 423641 - 428395 (+)
Type: CAZyme
Location: 423641 - 428395 (+)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanobrevibacter_A
Species
Methanobrevibacter_A smithii_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1093_c_0_376 | vegan > omnivore | 21.10839 | 0.00565 |
| Rep_1093_c_0_377 | vegan > omnivore | 2.19598 | 0.00565 |