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Cluster: Rep_1089_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1089_c_22 Rep_1089_c_22_11 5913 6668 - 1.A.30.1.3
TC Rep_1089_c_22 Rep_1089_c_22_12 6685 7452 - 1.A.30.1.3
pfam Rep_1089_c_22 Rep_1089_c_22_13 7487 9625 - MptE-like | Maf_flag10_N
pfam Rep_1089_c_22 Rep_1089_c_22_14 9622 10782 - Metalloenzyme
TC Rep_1089_c_22 Rep_1089_c_22_15 10779 12146 - 2.A.1.3.22
pfam Rep_1089_c_22 Rep_1089_c_22_16 12156 12866 - PNP_UDP_1
TC Rep_1089_c_22 Rep_1089_c_22_17 12901 14439 - 2.A.21.7.2
TC Rep_1089_c_22 Rep_1089_c_22_18 14535 14927 - 9.B.136.1.1
pfam Rep_1089_c_22 Rep_1089_c_22_19 15437 16408 + Methyltransf_5
CAZyme Rep_1089_c_22 Rep_1089_c_22_20 16405 17139 - GT6
Gene ID: Rep_1089_c_22_11
Type: TC
Location: 5913 - 6668 (-)
Gene ID: Rep_1089_c_22_12
Type: TC
Location: 6685 - 7452 (-)
Gene ID: Rep_1089_c_22_13
Type: pfam
Location: 7487 - 9625 (-)
Gene ID: Rep_1089_c_22_14
Type: pfam
Location: 9622 - 10782 (-)
Gene ID: Rep_1089_c_22_15
Type: TC
Location: 10779 - 12146 (-)
Gene ID: Rep_1089_c_22_16
Type: pfam
Location: 12156 - 12866 (-)
Gene ID: Rep_1089_c_22_17
Type: TC
Location: 12901 - 14439 (-)
Gene ID: Rep_1089_c_22_18
Type: TC
Location: 14535 - 14927 (-)
Gene ID: Rep_1089_c_22_19
Type: pfam
Location: 15437 - 16408 (+)
Gene ID: Rep_1089_c_22_20
Type: CAZyme
Location: 16405 - 17139 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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