Cluster: Rep_1089_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1089
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1089_c_9 | Rep_1089_c_9_13 | 12050 | 13249 | - | 3.A.11.1.3 |
| TC | Rep_1089_c_9 | Rep_1089_c_9_14 | 13249 | 14559 | - | 3.A.15.1.1 |
| pfam | Rep_1089_c_9 | Rep_1089_c_9_15 | 14566 | 15672 | - | NusA_N | KH_5 | KH_NusA_C |
| pfam | Rep_1089_c_9 | Rep_1089_c_9_16 | 15730 | 16560 | + | DNA_pol_B_exo1 | DNA_pol_B_exo2 | RNase_H_2 |
| CAZyme | Rep_1089_c_9 | Rep_1089_c_9_17 | 16549 | 17673 | - | GT4 |
Gene ID: Rep_1089_c_9_13
Type: TC
Location: 12050 - 13249 (-)
Type: TC
Location: 12050 - 13249 (-)
Gene ID: Rep_1089_c_9_14
Type: TC
Location: 13249 - 14559 (-)
Type: TC
Location: 13249 - 14559 (-)
Gene ID: Rep_1089_c_9_15
Type: pfam
Location: 14566 - 15672 (-)
Type: pfam
Location: 14566 - 15672 (-)
Gene ID: Rep_1089_c_9_16
Type: pfam
Location: 15730 - 16560 (+)
Type: pfam
Location: 15730 - 16560 (+)
Gene ID: Rep_1089_c_9_17
Type: CAZyme
Location: 16549 - 17673 (-)
Type: CAZyme
Location: 16549 - 17673 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
HGM08974
Species
HGM08974 sp900766555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.