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Cluster: Rep_1089_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1089_c_7 Rep_1089_c_7_68 69091 69855 - 9.B.97.5.1
TC Rep_1089_c_7 Rep_1089_c_7_69 69933 71015 + 3.A.1.24.1
TC Rep_1089_c_7 Rep_1089_c_7_70 71008 71652 + 3.A.1.24.5
TC Rep_1089_c_7 Rep_1089_c_7_71 71661 72449 + 3.A.1.24.5
TC Rep_1089_c_7 Rep_1089_c_7_72 72474 73262 + 3.A.1.24.5
pfam Rep_1089_c_7 Rep_1089_c_7_73 73343 74278 - Hexapep | Hexapep | Hexapep | LpxD | Hexapep_2 | Hexapep_2 | Hexapep_2 | Hexapep_2
pfam Rep_1089_c_7 Rep_1089_c_7_74 74269 75039 - TIM
CAZyme Rep_1089_c_7 Rep_1089_c_7_75 75085 76578 - GT9
STP Rep_1089_c_7 Rep_1089_c_7_76 76575 77888 - Pyr_redox_2
pfam Rep_1089_c_7 Rep_1089_c_7_77 77974 80556 + tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | Val_tRNA-synt_C | tRNA-synt_1_2
TC Rep_1089_c_7 Rep_1089_c_7_78 80605 81378 + 3.D.10.1.3
TC Rep_1089_c_7 Rep_1089_c_7_79 81378 83351 + 3.D.10.1.3
TC Rep_1089_c_7 Rep_1089_c_7_80 83353 84081 + 3.D.10.1.3
pfam Rep_1089_c_7 Rep_1089_c_7_81 84078 86447 + DUF1561
pfam Rep_1089_c_7 Rep_1089_c_7_82 86432 88717 + DUF1561
TC Rep_1089_c_7 Rep_1089_c_7_83 88737 89423 + 3.A.2.1.2
Gene ID: Rep_1089_c_7_68
Type: TC
Location: 69091 - 69855 (-)
Gene ID: Rep_1089_c_7_69
Type: TC
Location: 69933 - 71015 (+)
Gene ID: Rep_1089_c_7_70
Type: TC
Location: 71008 - 71652 (+)
Gene ID: Rep_1089_c_7_71
Type: TC
Location: 71661 - 72449 (+)
Gene ID: Rep_1089_c_7_72
Type: TC
Location: 72474 - 73262 (+)
Gene ID: Rep_1089_c_7_73
Type: pfam
Location: 73343 - 74278 (-)
Gene ID: Rep_1089_c_7_74
Type: pfam
Location: 74269 - 75039 (-)
Gene ID: Rep_1089_c_7_75
Type: CAZyme
Location: 75085 - 76578 (-)
Gene ID: Rep_1089_c_7_76
Type: STP
Location: 76575 - 77888 (-)
Gene ID: Rep_1089_c_7_77
Type: pfam
Location: 77974 - 80556 (+)
Gene ID: Rep_1089_c_7_78
Type: TC
Location: 80605 - 81378 (+)
Gene ID: Rep_1089_c_7_79
Type: TC
Location: 81378 - 83351 (+)
Gene ID: Rep_1089_c_7_80
Type: TC
Location: 83353 - 84081 (+)
Gene ID: Rep_1089_c_7_81
Type: pfam
Location: 84078 - 86447 (+)
Gene ID: Rep_1089_c_7_82
Type: pfam
Location: 86432 - 88717 (+)
Gene ID: Rep_1089_c_7_83
Type: TC
Location: 88737 - 89423 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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