Cluster: Rep_1089_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1089
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1089_c_2 | Rep_1089_c_2_5 | 3328 | 4077 | - | 3.A.1.3.28 |
| TC | Rep_1089_c_2 | Rep_1089_c_2_6 | 4074 | 4790 | - | 3.A.1.3.28 |
| TC | Rep_1089_c_2 | Rep_1089_c_2_7 | 4790 | 5620 | - | 3.A.1.3.28 |
| TC | Rep_1089_c_2 | Rep_1089_c_2_8 | 5770 | 7107 | + | 2.A.2.6.2 |
| pfam | Rep_1089_c_2 | Rep_1089_c_2_9 | 7097 | 8119 | + | Aldose_epim |
| CAZyme | Rep_1089_c_2 | Rep_1089_c_2_10 | 8119 | 10398 | + | GH65 |
| pfam | Rep_1089_c_2 | Rep_1089_c_2_11 | 10395 | 10898 | + | Hydrolase | HAD_2 |
| TC | Rep_1089_c_2 | Rep_1089_c_2_12 | 11072 | 12508 | - | 2.A.3.2.8 |
| TC | Rep_1089_c_2 | Rep_1089_c_2_13 | 12613 | 13302 | - | 2.A.38.4.6 |
| TC | Rep_1089_c_2 | Rep_1089_c_2_14 | 13299 | 14669 | - | 2.A.38.4.5 |
| pfam | Rep_1089_c_2 | Rep_1089_c_2_15 | 14781 | 15602 | + | Flg_bb_rod | Flg_bbr_C | LlgE_F_G_D1 |
| pfam | Rep_1089_c_2 | Rep_1089_c_2_16 | 15606 | 16082 | - | Ank | Ank_2 | Ank_3 | Ank_4 | Ank_5 |
| TC | Rep_1089_c_2 | Rep_1089_c_2_17 | 16167 | 17357 | + | 2.A.37.2.3 |
Gene ID: Rep_1089_c_2_5
Type: TC
Location: 3328 - 4077 (-)
Type: TC
Location: 3328 - 4077 (-)
Gene ID: Rep_1089_c_2_6
Type: TC
Location: 4074 - 4790 (-)
Type: TC
Location: 4074 - 4790 (-)
Gene ID: Rep_1089_c_2_7
Type: TC
Location: 4790 - 5620 (-)
Type: TC
Location: 4790 - 5620 (-)
Gene ID: Rep_1089_c_2_8
Type: TC
Location: 5770 - 7107 (+)
Type: TC
Location: 5770 - 7107 (+)
Gene ID: Rep_1089_c_2_9
Type: pfam
Location: 7097 - 8119 (+)
Type: pfam
Location: 7097 - 8119 (+)
Gene ID: Rep_1089_c_2_10
Type: CAZyme
Location: 8119 - 10398 (+)
Type: CAZyme
Location: 8119 - 10398 (+)
Gene ID: Rep_1089_c_2_11
Type: pfam
Location: 10395 - 10898 (+)
Type: pfam
Location: 10395 - 10898 (+)
Gene ID: Rep_1089_c_2_12
Type: TC
Location: 11072 - 12508 (-)
Type: TC
Location: 11072 - 12508 (-)
Gene ID: Rep_1089_c_2_13
Type: TC
Location: 12613 - 13302 (-)
Type: TC
Location: 12613 - 13302 (-)
Gene ID: Rep_1089_c_2_14
Type: TC
Location: 13299 - 14669 (-)
Type: TC
Location: 13299 - 14669 (-)
Gene ID: Rep_1089_c_2_15
Type: pfam
Location: 14781 - 15602 (+)
Type: pfam
Location: 14781 - 15602 (+)
Gene ID: Rep_1089_c_2_16
Type: pfam
Location: 15606 - 16082 (-)
Type: pfam
Location: 15606 - 16082 (-)
Gene ID: Rep_1089_c_2_17
Type: TC
Location: 16167 - 17357 (+)
Type: TC
Location: 16167 - 17357 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
HGM08974
Species
HGM08974 sp900766555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.