Cluster: Rep_1087_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1087
- CGC Family ID: CGCFAM_03069
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1087_c_40 | Rep_1087_c_40_4 | 2661 | 3701 | + | 2.A.98.1.1 |
| TC | Rep_1087_c_40 | Rep_1087_c_40_5 | 3711 | 4874 | + | 2.A.103.1.3 |
| CAZyme | Rep_1087_c_40 | Rep_1087_c_40_6 | 4925 | 6859 | + | GT51 |
| TC | Rep_1087_c_40 | Rep_1087_c_40_7 | 6878 | 8581 | + | 3.A.1.106.1 |
Gene ID: Rep_1087_c_40_4
Type: TC
Location: 2661 - 3701 (+)
Type: TC
Location: 2661 - 3701 (+)
Gene ID: Rep_1087_c_40_5
Type: TC
Location: 3711 - 4874 (+)
Type: TC
Location: 3711 - 4874 (+)
Gene ID: Rep_1087_c_40_6
Type: CAZyme
Location: 4925 - 6859 (+)
Type: CAZyme
Location: 4925 - 6859 (+)
Gene ID: Rep_1087_c_40_7
Type: TC
Location: 6878 - 8581 (+)
Type: TC
Location: 6878 - 8581 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D winghamensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.