Cluster: Rep_1087_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1087
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1087_c_2 | Rep_1087_c_2_11 | 8810 | 9973 | - | GT4 |
| CAZyme | Rep_1087_c_2 | Rep_1087_c_2_12 | 9973 | 11121 | - | GT4 |
| CAZyme | Rep_1087_c_2 | Rep_1087_c_2_13 | 11124 | 12065 | - | GT2 |
| TC | Rep_1087_c_2 | Rep_1087_c_2_14 | 12065 | 13771 | - | 3.A.1.106.15 |
Gene ID: Rep_1087_c_2_11
Type: CAZyme
Location: 8810 - 9973 (-)
Type: CAZyme
Location: 8810 - 9973 (-)
Gene ID: Rep_1087_c_2_12
Type: CAZyme
Location: 9973 - 11121 (-)
Type: CAZyme
Location: 9973 - 11121 (-)
Gene ID: Rep_1087_c_2_13
Type: CAZyme
Location: 11124 - 12065 (-)
Type: CAZyme
Location: 11124 - 12065 (-)
Gene ID: Rep_1087_c_2_14
Type: TC
Location: 12065 - 13771 (-)
Type: TC
Location: 12065 - 13771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D winghamensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.