Cluster: Rep_1087_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1087
- CGC Family ID: CGCFAM_03920
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1087_c_1 | Rep_1087_c_1_63 | 60795 | 61241 | - | 9.B.27.3.2 |
| TC | Rep_1087_c_1 | Rep_1087_c_1_64 | 61256 | 62581 | - | 2.A.22.5.3 |
| TC | Rep_1087_c_1 | Rep_1087_c_1_65 | 62695 | 64425 | - | 3.A.25.2.1 |
| TC | Rep_1087_c_1 | Rep_1087_c_1_66 | 64413 | 65351 | - | 2.A.4.7.1 |
| NULL(UNKNOWN) | Rep_1087_c_1 | Rep_1087_c_1_67 | 65360 | 65833 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1087_c_1 | Rep_1087_c_1_68 | 65826 | 66713 | - | CE11 |
Gene ID: Rep_1087_c_1_63
Type: TC
Location: 60795 - 61241 (-)
Type: TC
Location: 60795 - 61241 (-)
Gene ID: Rep_1087_c_1_64
Type: TC
Location: 61256 - 62581 (-)
Type: TC
Location: 61256 - 62581 (-)
Gene ID: Rep_1087_c_1_65
Type: TC
Location: 62695 - 64425 (-)
Type: TC
Location: 62695 - 64425 (-)
Gene ID: Rep_1087_c_1_66
Type: TC
Location: 64413 - 65351 (-)
Type: TC
Location: 64413 - 65351 (-)
Gene ID: Rep_1087_c_1_67
Type:
Location: 65360 - 65833 (-)
Type:
Location: 65360 - 65833 (-)
Gene ID: Rep_1087_c_1_68
Type: CAZyme
Location: 65826 - 66713 (-)
Type: CAZyme
Location: 65826 - 66713 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D winghamensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.