Cluster: Rep_1087_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1087
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1087_c_68 | Rep_1087_c_68_1 | 3 | 716 | + | GT4 |
| pfam | Rep_1087_c_68 | Rep_1087_c_68_2 | 773 | 1213 | + | RuvX |
| pfam | Rep_1087_c_68 | Rep_1087_c_68_3 | 1190 | 2584 | - | CheX |
| TC | Rep_1087_c_68 | Rep_1087_c_68_4 | 2594 | 3517 | - | 1.B.6.1.2 |
Gene ID: Rep_1087_c_68_1
Type: CAZyme
Location: 3 - 716 (+)
Type: CAZyme
Location: 3 - 716 (+)
Gene ID: Rep_1087_c_68_2
Type: pfam
Location: 773 - 1213 (+)
Type: pfam
Location: 773 - 1213 (+)
Gene ID: Rep_1087_c_68_3
Type: pfam
Location: 1190 - 2584 (-)
Type: pfam
Location: 1190 - 2584 (-)
Gene ID: Rep_1087_c_68_4
Type: TC
Location: 2594 - 3517 (-)
Type: TC
Location: 2594 - 3517 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D winghamensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.