Cluster: Rep_1087_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1087
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1087_c_1 | Rep_1087_c_1_12 | 7207 | 8586 | - | AA4 |
| pfam | Rep_1087_c_1 | Rep_1087_c_1_13 | 8596 | 9432 | - | PGBA_N |
| NULL(UNKNOWN) | Rep_1087_c_1 | Rep_1087_c_1_14 | 9635 | 10240 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1087_c_1 | Rep_1087_c_1_15 | 10520 | 12178 | - | 2.A.21.7.2 |
Gene ID: Rep_1087_c_1_12
Type: CAZyme
Location: 7207 - 8586 (-)
Type: CAZyme
Location: 7207 - 8586 (-)
Gene ID: Rep_1087_c_1_13
Type: pfam
Location: 8596 - 9432 (-)
Type: pfam
Location: 8596 - 9432 (-)
Gene ID: Rep_1087_c_1_14
Type:
Location: 9635 - 10240 (+)
Type:
Location: 9635 - 10240 (+)
Gene ID: Rep_1087_c_1_15
Type: TC
Location: 10520 - 12178 (-)
Type: TC
Location: 10520 - 12178 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D winghamensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.