Cluster: Rep_1086_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1086
- CGC Family ID: CGCFAM_03920
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1086_c_46 | Rep_1086_c_46_10 | 8840 | 10174 | - | 2.A.22.5.3 |
| TC | Rep_1086_c_46 | Rep_1086_c_46_11 | 10235 | 11965 | - | 3.A.25.1.1 |
| TC | Rep_1086_c_46 | Rep_1086_c_46_12 | 11949 | 12830 | - | 2.A.4.7.1 |
| NULL(UNKNOWN) | Rep_1086_c_46 | Rep_1086_c_46_13 | 12832 | 13287 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1086_c_46 | Rep_1086_c_46_14 | 13296 | 14189 | - | CE11 |
Gene ID: Rep_1086_c_46_10
Type: TC
Location: 8840 - 10174 (-)
Type: TC
Location: 8840 - 10174 (-)
Gene ID: Rep_1086_c_46_11
Type: TC
Location: 10235 - 11965 (-)
Type: TC
Location: 10235 - 11965 (-)
Gene ID: Rep_1086_c_46_12
Type: TC
Location: 11949 - 12830 (-)
Type: TC
Location: 11949 - 12830 (-)
Gene ID: Rep_1086_c_46_13
Type:
Location: 12832 - 13287 (-)
Type:
Location: 12832 - 13287 (-)
Gene ID: Rep_1086_c_46_14
Type: CAZyme
Location: 13296 - 14189 (-)
Type: CAZyme
Location: 13296 - 14189 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D pullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.