Cluster: Rep_1086_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1086
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1086_c_23 | Rep_1086_c_23_14 | 11671 | 13518 | + | 3.A.11.3.1 |
| TC | Rep_1086_c_23 | Rep_1086_c_23_15 | 13520 | 14554 | - | 2.A.16.4.4 |
| TC | Rep_1086_c_23 | Rep_1086_c_23_16 | 14699 | 16705 | + | 1.B.52.2.1 |
| pfam | Rep_1086_c_23 | Rep_1086_c_23_17 | 16868 | 17284 | - | Usp |
| peptidase | Rep_1086_c_23 | Rep_1086_c_23_18 | 17410 | 19245 | - | C44.UPW |
| CAZyme | Rep_1086_c_23 | Rep_1086_c_23_19 | 19247 | 21328 | - | GT66 |
| pfam | Rep_1086_c_23 | Rep_1086_c_23_20 | 21282 | 21671 | - | Ribosomal_S9 |
| pfam | Rep_1086_c_23 | Rep_1086_c_23_21 | 21681 | 22100 | - | Ribosomal_L13 |
| TC | Rep_1086_c_23 | Rep_1086_c_23_22 | 22252 | 23676 | - | 2.A.13.1.2 |
| TC | Rep_1086_c_23 | Rep_1086_c_23_23 | 23746 | 24441 | - | 3.A.1.4.8 |
| TC | Rep_1086_c_23 | Rep_1086_c_23_24 | 24428 | 25201 | - | 3.A.1.4.10 |
| TC | Rep_1086_c_23 | Rep_1086_c_23_25 | 25201 | 26400 | - | 3.A.1.4.8 |
| TC | Rep_1086_c_23 | Rep_1086_c_23_26 | 26410 | 27309 | - | 3.A.1.4.10 |
Gene ID: Rep_1086_c_23_14
Type: TC
Location: 11671 - 13518 (+)
Type: TC
Location: 11671 - 13518 (+)
Gene ID: Rep_1086_c_23_15
Type: TC
Location: 13520 - 14554 (-)
Type: TC
Location: 13520 - 14554 (-)
Gene ID: Rep_1086_c_23_16
Type: TC
Location: 14699 - 16705 (+)
Type: TC
Location: 14699 - 16705 (+)
Gene ID: Rep_1086_c_23_17
Type: pfam
Location: 16868 - 17284 (-)
Type: pfam
Location: 16868 - 17284 (-)
Gene ID: Rep_1086_c_23_18
Type: peptidase
Location: 17410 - 19245 (-)
Type: peptidase
Location: 17410 - 19245 (-)
Gene ID: Rep_1086_c_23_19
Type: CAZyme
Location: 19247 - 21328 (-)
Type: CAZyme
Location: 19247 - 21328 (-)
Gene ID: Rep_1086_c_23_20
Type: pfam
Location: 21282 - 21671 (-)
Type: pfam
Location: 21282 - 21671 (-)
Gene ID: Rep_1086_c_23_21
Type: pfam
Location: 21681 - 22100 (-)
Type: pfam
Location: 21681 - 22100 (-)
Gene ID: Rep_1086_c_23_22
Type: TC
Location: 22252 - 23676 (-)
Type: TC
Location: 22252 - 23676 (-)
Gene ID: Rep_1086_c_23_23
Type: TC
Location: 23746 - 24441 (-)
Type: TC
Location: 23746 - 24441 (-)
Gene ID: Rep_1086_c_23_24
Type: TC
Location: 24428 - 25201 (-)
Type: TC
Location: 24428 - 25201 (-)
Gene ID: Rep_1086_c_23_25
Type: TC
Location: 25201 - 26400 (-)
Type: TC
Location: 25201 - 26400 (-)
Gene ID: Rep_1086_c_23_26
Type: TC
Location: 26410 - 27309 (-)
Type: TC
Location: 26410 - 27309 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D pullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.