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Cluster: Rep_1086_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1086_c_20 Rep_1086_c_20_39 37364 38599 - 3.A.1.125.1
TC Rep_1086_c_20 Rep_1086_c_20_40 38596 41160 - 3.A.5.1.1
pfam Rep_1086_c_20 Rep_1086_c_20_41 41280 42299 + URO-D
TC Rep_1086_c_20 Rep_1086_c_20_42 42511 44712 + 2.A.114.1.5
pfam Rep_1086_c_20 Rep_1086_c_20_43 44709 44915 + Sel_put
pfam Rep_1086_c_20 Rep_1086_c_20_44 44960 46219 - OEP | OEP
TC Rep_1086_c_20 Rep_1086_c_20_45 46209 49334 - 2.A.6.3.6
TC Rep_1086_c_20 Rep_1086_c_20_46 49335 50399 - 2.A.6.2.4
CAZyme Rep_1086_c_20 Rep_1086_c_20_47 50533 52536 + GT66
Gene ID: Rep_1086_c_20_39
Type: TC
Location: 37364 - 38599 (-)
Gene ID: Rep_1086_c_20_40
Type: TC
Location: 38596 - 41160 (-)
Gene ID: Rep_1086_c_20_41
Type: pfam
Location: 41280 - 42299 (+)
Gene ID: Rep_1086_c_20_42
Type: TC
Location: 42511 - 44712 (+)
Gene ID: Rep_1086_c_20_43
Type: pfam
Location: 44709 - 44915 (+)
Gene ID: Rep_1086_c_20_44
Type: pfam
Location: 44960 - 46219 (-)
Gene ID: Rep_1086_c_20_45
Type: TC
Location: 46209 - 49334 (-)
Gene ID: Rep_1086_c_20_46
Type: TC
Location: 49335 - 50399 (-)
Gene ID: Rep_1086_c_20_47
Type: CAZyme
Location: 50533 - 52536 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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