Cluster: Rep_1086_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1086
- CGC Family ID: CGCFAM_09140
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1086_c_9 | Rep_1086_c_9_59 | 58300 | 59157 | - | 1.A.23.2.2 |
| peptidase | Rep_1086_c_9 | Rep_1086_c_9_60 | 59167 | 60369 | - | M38.UNW |
| CAZyme | Rep_1086_c_9 | Rep_1086_c_9_61 | 60553 | 61617 | - | GT9 |
| CAZyme | Rep_1086_c_9 | Rep_1086_c_9_62 | 61598 | 62371 | - | GT2 |
| pfam | Rep_1086_c_9 | Rep_1086_c_9_63 | 62364 | 63278 | - | Lip_A_acyltrans |
| CAZyme | Rep_1086_c_9 | Rep_1086_c_9_64 | 63275 | 64288 | - | GT9 |
Gene ID: Rep_1086_c_9_59
Type: TC
Location: 58300 - 59157 (-)
Type: TC
Location: 58300 - 59157 (-)
Gene ID: Rep_1086_c_9_60
Type: peptidase
Location: 59167 - 60369 (-)
Type: peptidase
Location: 59167 - 60369 (-)
Gene ID: Rep_1086_c_9_61
Type: CAZyme
Location: 60553 - 61617 (-)
Type: CAZyme
Location: 60553 - 61617 (-)
Gene ID: Rep_1086_c_9_62
Type: CAZyme
Location: 61598 - 62371 (-)
Type: CAZyme
Location: 61598 - 62371 (-)
Gene ID: Rep_1086_c_9_63
Type: pfam
Location: 62364 - 63278 (-)
Type: pfam
Location: 62364 - 63278 (-)
Gene ID: Rep_1086_c_9_64
Type: CAZyme
Location: 63275 - 64288 (-)
Type: CAZyme
Location: 63275 - 64288 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D pullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.