Cluster: Rep_1086_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1086
- CGC Family ID: CGCFAM_00490
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1086_c_8 | Rep_1086_c_8_5 | 4443 | 6170 | - | 3.A.6.2.1 |
| STP | Rep_1086_c_8 | Rep_1086_c_8_6 | 6181 | 7284 | - | Aminotran_1_2 |
| NULL(UNKNOWN) | Rep_1086_c_8 | Rep_1086_c_8_7 | 7352 | 8785 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1086_c_8 | Rep_1086_c_8_8 | 8863 | 10005 | - | GT4 |
| CAZyme | Rep_1086_c_8 | Rep_1086_c_8_9 | 9996 | 11114 | - | GT4 |
| CAZyme | Rep_1086_c_8 | Rep_1086_c_8_10 | 11111 | 12040 | - | GT2 |
| TC | Rep_1086_c_8 | Rep_1086_c_8_11 | 12062 | 13771 | - | 3.A.1.106.15 |
Gene ID: Rep_1086_c_8_5
Type: TC
Location: 4443 - 6170 (-)
Type: TC
Location: 4443 - 6170 (-)
Gene ID: Rep_1086_c_8_6
Type: STP
Location: 6181 - 7284 (-)
Type: STP
Location: 6181 - 7284 (-)
Gene ID: Rep_1086_c_8_7
Type:
Location: 7352 - 8785 (-)
Type:
Location: 7352 - 8785 (-)
Gene ID: Rep_1086_c_8_8
Type: CAZyme
Location: 8863 - 10005 (-)
Type: CAZyme
Location: 8863 - 10005 (-)
Gene ID: Rep_1086_c_8_9
Type: CAZyme
Location: 9996 - 11114 (-)
Type: CAZyme
Location: 9996 - 11114 (-)
Gene ID: Rep_1086_c_8_10
Type: CAZyme
Location: 11111 - 12040 (-)
Type: CAZyme
Location: 11111 - 12040 (-)
Gene ID: Rep_1086_c_8_11
Type: TC
Location: 12062 - 13771 (-)
Type: TC
Location: 12062 - 13771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D pullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.