Cluster: Rep_1080_CGC8
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1080
- CGC Family ID: CGCFAM_05331
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1080_c_37 | Rep_1080_c_37_1 | 98 | 1090 | + | 2.A.56.1.1 |
| pfam | Rep_1080_c_37 | Rep_1080_c_37_2 | 1090 | 1632 | + | DctQ |
| TC | Rep_1080_c_37 | Rep_1080_c_37_3 | 1644 | 2927 | + | 2.A.56.1.1 |
| TC | Rep_1080_c_37 | Rep_1080_c_37_4 | 2953 | 4005 | - | 9.B.34.1.3 |
| TC | Rep_1080_c_37 | Rep_1080_c_37_5 | 3998 | 5077 | - | 9.B.34.1.3 |
| NULL(UNKNOWN) | Rep_1080_c_37 | Rep_1080_c_37_6 | 5125 | 5283 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1080_c_37 | Rep_1080_c_37_7 | 5294 | 7138 | - | 1.A.23.4.10 |
| TC | Rep_1080_c_37 | Rep_1080_c_37_8 | 7131 | 7775 | - | 2.A.53.3.12 |
| TC | Rep_1080_c_37 | Rep_1080_c_37_9 | 7947 | 8645 | + | 1.A.14.3.3 |
| pfam | Rep_1080_c_37 | Rep_1080_c_37_10 | 8638 | 9021 | + | ThiD2 |
| pfam | Rep_1080_c_37 | Rep_1080_c_37_11 | 9084 | 9413 | + | SecG |
| CAZyme | Rep_1080_c_37 | Rep_1080_c_37_12 | 9416 | 10375 | + | CE4 |
| pfam | Rep_1080_c_37 | Rep_1080_c_37_13 | 10365 | 10922 | + | RRF |
| NULL(UNKNOWN) | Rep_1080_c_37 | Rep_1080_c_37_14 | 11030 | 11707 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1080_c_37 | Rep_1080_c_37_15 | 11809 | 14184 | + | 5.A.3.4.2 |
Gene ID: Rep_1080_c_37_1
Type: TC
Location: 98 - 1090 (+)
Type: TC
Location: 98 - 1090 (+)
Gene ID: Rep_1080_c_37_2
Type: pfam
Location: 1090 - 1632 (+)
Type: pfam
Location: 1090 - 1632 (+)
Gene ID: Rep_1080_c_37_3
Type: TC
Location: 1644 - 2927 (+)
Type: TC
Location: 1644 - 2927 (+)
Gene ID: Rep_1080_c_37_4
Type: TC
Location: 2953 - 4005 (-)
Type: TC
Location: 2953 - 4005 (-)
Gene ID: Rep_1080_c_37_5
Type: TC
Location: 3998 - 5077 (-)
Type: TC
Location: 3998 - 5077 (-)
Gene ID: Rep_1080_c_37_6
Type:
Location: 5125 - 5283 (-)
Type:
Location: 5125 - 5283 (-)
Gene ID: Rep_1080_c_37_7
Type: TC
Location: 5294 - 7138 (-)
Type: TC
Location: 5294 - 7138 (-)
Gene ID: Rep_1080_c_37_8
Type: TC
Location: 7131 - 7775 (-)
Type: TC
Location: 7131 - 7775 (-)
Gene ID: Rep_1080_c_37_9
Type: TC
Location: 7947 - 8645 (+)
Type: TC
Location: 7947 - 8645 (+)
Gene ID: Rep_1080_c_37_10
Type: pfam
Location: 8638 - 9021 (+)
Type: pfam
Location: 8638 - 9021 (+)
Gene ID: Rep_1080_c_37_11
Type: pfam
Location: 9084 - 9413 (+)
Type: pfam
Location: 9084 - 9413 (+)
Gene ID: Rep_1080_c_37_12
Type: CAZyme
Location: 9416 - 10375 (+)
Type: CAZyme
Location: 9416 - 10375 (+)
Gene ID: Rep_1080_c_37_13
Type: pfam
Location: 10365 - 10922 (+)
Type: pfam
Location: 10365 - 10922 (+)
Gene ID: Rep_1080_c_37_14
Type:
Location: 11030 - 11707 (-)
Type:
Location: 11030 - 11707 (-)
Gene ID: Rep_1080_c_37_15
Type: TC
Location: 11809 - 14184 (+)
Type: TC
Location: 11809 - 14184 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Campylobacteraceae
Genus
Campylobacter_A
Species
Campylobacter_A concisus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.