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Cluster: Rep_1080_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1080_c_26 Rep_1080_c_26_11 9544 10431 + 2.A.7.7.3
TC Rep_1080_c_26 Rep_1080_c_26_12 10472 11302 + 2.A.7.7.2
NULL(UNKNOWN) Rep_1080_c_26 Rep_1080_c_26_13 11295 11747 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1080_c_26 Rep_1080_c_26_14 11856 12911 - GH3
pfam Rep_1080_c_26 Rep_1080_c_26_15 12908 13798 - NAD_Gly3P_dh_N | NAD_Gly3P_dh_C | GPD_NAD_C_bact
pfam Rep_1080_c_26 Rep_1080_c_26_16 13811 15232 - GatB_Yqey | GatB_N
TC Rep_1080_c_26 Rep_1080_c_26_17 15396 16079 - 3.A.2.1.6
TC Rep_1080_c_26 Rep_1080_c_26_18 16145 16906 - 2.A.102.3.1
Gene ID: Rep_1080_c_26_11
Type: TC
Location: 9544 - 10431 (+)
Gene ID: Rep_1080_c_26_12
Type: TC
Location: 10472 - 11302 (+)
Gene ID: Rep_1080_c_26_13
Type:
Location: 11295 - 11747 (+)
Gene ID: Rep_1080_c_26_14
Type: CAZyme
Location: 11856 - 12911 (-)
Gene ID: Rep_1080_c_26_15
Type: pfam
Location: 12908 - 13798 (-)
Gene ID: Rep_1080_c_26_16
Type: pfam
Location: 13811 - 15232 (-)
Gene ID: Rep_1080_c_26_17
Type: TC
Location: 15396 - 16079 (-)
Gene ID: Rep_1080_c_26_18
Type: TC
Location: 16145 - 16906 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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