Cluster: Rep_1080_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1080
- CGC Family ID: CGCFAM_00396
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1080_c_2 | Rep_1080_c_2_10 | 11394 | 12644 | + | PL1_6 |
| TC | Rep_1080_c_2 | Rep_1080_c_2_11 | 12694 | 14922 | - | 2.A.6.8.2 |
| pfam | Rep_1080_c_2 | Rep_1080_c_2_12 | 14919 | 15437 | - | LolA |
| pfam | Rep_1080_c_2 | Rep_1080_c_2_13 | 15434 | 15862 | - | Acyl-ACP_TE | 4HBT | 4HBT_2 | Acyl-ACP_TE_C |
| CAZyme | Rep_1080_c_2 | Rep_1080_c_2_14 | 15859 | 17469 | - | GT2 |
Gene ID: Rep_1080_c_2_10
Type: CAZyme
Location: 11394 - 12644 (+)
Type: CAZyme
Location: 11394 - 12644 (+)
Gene ID: Rep_1080_c_2_11
Type: TC
Location: 12694 - 14922 (-)
Type: TC
Location: 12694 - 14922 (-)
Gene ID: Rep_1080_c_2_12
Type: pfam
Location: 14919 - 15437 (-)
Type: pfam
Location: 14919 - 15437 (-)
Gene ID: Rep_1080_c_2_13
Type: pfam
Location: 15434 - 15862 (-)
Type: pfam
Location: 15434 - 15862 (-)
Gene ID: Rep_1080_c_2_14
Type: CAZyme
Location: 15859 - 17469 (-)
Type: CAZyme
Location: 15859 - 17469 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Campylobacteraceae
Genus
Campylobacter_A
Species
Campylobacter_A concisus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.