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Cluster: Rep_1080_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1080_c_1 Rep_1080_c_1_13 12385 13731 - 1.B.17.3.7
TC Rep_1080_c_1 Rep_1080_c_1_14 13733 15661 - 3.A.1.122.12
TC Rep_1080_c_1 Rep_1080_c_1_15 15662 16858 - 3.A.1.122.1
pfam Rep_1080_c_1 Rep_1080_c_1_16 16912 18945 - UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2
CAZyme Rep_1080_c_1 Rep_1080_c_1_17 19011 21179 + GT51
peptidase Rep_1080_c_1 Rep_1080_c_1_18 21181 26304 + I39.UPW
pfam Rep_1080_c_1 Rep_1080_c_1_19 26424 29048 + tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | Val_tRNA-synt_C | tRNA-synt_1_2
TC Rep_1080_c_1 Rep_1080_c_1_20 29048 30004 + 3.A.1.24.2
TC Rep_1080_c_1 Rep_1080_c_1_21 30004 30678 + 3.A.1.24.5
TC Rep_1080_c_1 Rep_1080_c_1_22 30938 31720 + 3.A.1.24.5
TC Rep_1080_c_1 Rep_1080_c_1_23 31795 32574 + 3.A.1.24.5
pfam Rep_1080_c_1 Rep_1080_c_1_24 32732 33322 + VTT_dom
pfam Rep_1080_c_1 Rep_1080_c_1_25 33392 34180 - Asp_Glu_race
TC Rep_1080_c_1 Rep_1080_c_1_26 34273 35433 + 2.A.103.1.1
CAZyme Rep_1080_c_1 Rep_1080_c_1_27 35430 36452 + GT28
Gene ID: Rep_1080_c_1_13
Type: TC
Location: 12385 - 13731 (-)
Gene ID: Rep_1080_c_1_14
Type: TC
Location: 13733 - 15661 (-)
Gene ID: Rep_1080_c_1_15
Type: TC
Location: 15662 - 16858 (-)
Gene ID: Rep_1080_c_1_16
Type: pfam
Location: 16912 - 18945 (-)
Gene ID: Rep_1080_c_1_17
Type: CAZyme
Location: 19011 - 21179 (+)
Gene ID: Rep_1080_c_1_18
Type: peptidase
Location: 21181 - 26304 (+)
Gene ID: Rep_1080_c_1_19
Type: pfam
Location: 26424 - 29048 (+)
Gene ID: Rep_1080_c_1_20
Type: TC
Location: 29048 - 30004 (+)
Gene ID: Rep_1080_c_1_21
Type: TC
Location: 30004 - 30678 (+)
Gene ID: Rep_1080_c_1_22
Type: TC
Location: 30938 - 31720 (+)
Gene ID: Rep_1080_c_1_23
Type: TC
Location: 31795 - 32574 (+)
Gene ID: Rep_1080_c_1_24
Type: pfam
Location: 32732 - 33322 (+)
Gene ID: Rep_1080_c_1_25
Type: pfam
Location: 33392 - 34180 (-)
Gene ID: Rep_1080_c_1_26
Type: TC
Location: 34273 - 35433 (+)
Gene ID: Rep_1080_c_1_27
Type: CAZyme
Location: 35430 - 36452 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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