Cluster: Rep_107_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_107
- CGC Family ID: CGCFAM_02538
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_107_c_18 | Rep_107_c_18_25 | 26999 | 28021 | + | 2.A.19.5.2 |
| TC | Rep_107_c_18 | Rep_107_c_18_26 | 28706 | 30160 | + | 9.B.126.2.2 |
| pfam | Rep_107_c_18 | Rep_107_c_18_27 | 30172 | 31089 | + | Patatin |
| CAZyme | Rep_107_c_18 | Rep_107_c_18_28 | 31093 | 32790 | + | GH13_38 |
Gene ID: Rep_107_c_18_25
Type: TC
Location: 26999 - 28021 (+)
Type: TC
Location: 26999 - 28021 (+)
Gene ID: Rep_107_c_18_26
Type: TC
Location: 28706 - 30160 (+)
Type: TC
Location: 28706 - 30160 (+)
Gene ID: Rep_107_c_18_27
Type: pfam
Location: 30172 - 31089 (+)
Type: pfam
Location: 30172 - 31089 (+)
Gene ID: Rep_107_c_18_28
Type: CAZyme
Location: 31093 - 32790 (+)
Type: CAZyme
Location: 31093 - 32790 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp902489635
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.