Cluster: Rep_107_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_107
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_107_c_41 | Rep_107_c_41_2 | 423 | 1466 | + | GT2 |
| pfam | Rep_107_c_41 | Rep_107_c_41_3 | 1463 | 2533 | + | EpsG |
| CAZyme | Rep_107_c_41 | Rep_107_c_41_4 | 2527 | 3708 | + | GT4 |
| CAZyme | Rep_107_c_41 | Rep_107_c_41_5 | 3736 | 4584 | + | GT2 |
| CAZyme | Rep_107_c_41 | Rep_107_c_41_6 | 4581 | 5576 | + | GT2 |
| TC | Rep_107_c_41 | Rep_107_c_41_7 | 5583 | 6251 | + | 9.B.18.1.2 |
Gene ID: Rep_107_c_41_2
Type: CAZyme
Location: 423 - 1466 (+)
Type: CAZyme
Location: 423 - 1466 (+)
Gene ID: Rep_107_c_41_3
Type: pfam
Location: 1463 - 2533 (+)
Type: pfam
Location: 1463 - 2533 (+)
Gene ID: Rep_107_c_41_4
Type: CAZyme
Location: 2527 - 3708 (+)
Type: CAZyme
Location: 2527 - 3708 (+)
Gene ID: Rep_107_c_41_5
Type: CAZyme
Location: 3736 - 4584 (+)
Type: CAZyme
Location: 3736 - 4584 (+)
Gene ID: Rep_107_c_41_6
Type: CAZyme
Location: 4581 - 5576 (+)
Type: CAZyme
Location: 4581 - 5576 (+)
Gene ID: Rep_107_c_41_7
Type: TC
Location: 5583 - 6251 (+)
Type: TC
Location: 5583 - 6251 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp902489635
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.