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Cluster: Rep_1078_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1078_c_17 Rep_1078_c_17_20 20942 21943 + GT2
pfam Rep_1078_c_17 Rep_1078_c_17_21 21985 23085 + EpsG
pfam Rep_1078_c_17 Rep_1078_c_17_22 23087 23554 + Hexapep_2 | Hexapep_2
CAZyme Rep_1078_c_17 Rep_1078_c_17_23 23556 24731 + GT4
CAZyme Rep_1078_c_17 Rep_1078_c_17_24 24724 25470 + GT2
pfam Rep_1078_c_17 Rep_1078_c_17_25 25485 26654 + UDPG_MGDP_dh | NAD_Gly3P_dh_N | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N | F420_oxidored
pfam Rep_1078_c_17 Rep_1078_c_17_26 26658 27023 - GtrA_DPMS_TM
TC Rep_1078_c_17 Rep_1078_c_17_27 27202 28143 - 9.B.18.1.3
NULL(UNKNOWN) Rep_1078_c_17 Rep_1078_c_17_28 28277 28387 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1078_c_17 Rep_1078_c_17_29 28463 28882 + 2.A.115.1.7
TC Rep_1078_c_17 Rep_1078_c_17_30 28887 29612 - 1.B.42.1.2
Gene ID: Rep_1078_c_17_20
Type: CAZyme
Location: 20942 - 21943 (+)
Gene ID: Rep_1078_c_17_21
Type: pfam
Location: 21985 - 23085 (+)
Gene ID: Rep_1078_c_17_22
Type: pfam
Location: 23087 - 23554 (+)
Gene ID: Rep_1078_c_17_23
Type: CAZyme
Location: 23556 - 24731 (+)
Gene ID: Rep_1078_c_17_24
Type: CAZyme
Location: 24724 - 25470 (+)
Gene ID: Rep_1078_c_17_25
Type: pfam
Location: 25485 - 26654 (+)
Gene ID: Rep_1078_c_17_26
Type: pfam
Location: 26658 - 27023 (-)
Gene ID: Rep_1078_c_17_27
Type: TC
Location: 27202 - 28143 (-)
Gene ID: Rep_1078_c_17_28
Type:
Location: 28277 - 28387 (+)
Gene ID: Rep_1078_c_17_29
Type: TC
Location: 28463 - 28882 (+)
Gene ID: Rep_1078_c_17_30
Type: TC
Location: 28887 - 29612 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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