Cluster: Rep_1074_CGC2
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_1074
- CGC Family ID: CGCFAM_04801
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1074_c_0 | Rep_1074_c_0_364 | 351919 | 353694 | - | 9.B.18.2.1 |
| STP | Rep_1074_c_0 | Rep_1074_c_0_365 | 353696 | 354856 | - | Aminotran_1_2 |
| pfam | Rep_1074_c_0 | Rep_1074_c_0_366 | 354954 | 355544 | - | PglD_N |
| TC | Rep_1074_c_0 | Rep_1074_c_0_367 | 355531 | 356133 | - | 9.B.18.1.2 |
| CAZyme | Rep_1074_c_0 | Rep_1074_c_0_368 | 356126 | 357256 | - | GT4 |
| CAZyme | Rep_1074_c_0 | Rep_1074_c_0_369 | 357266 | 359407 | - | GT66 |
| CAZyme | Rep_1074_c_0 | Rep_1074_c_0_370 | 359411 | 360508 | - | GT4 |
| CAZyme | Rep_1074_c_0 | Rep_1074_c_0_371 | 360496 | 361425 | - | GT2 |
| CAZyme | Rep_1074_c_0 | Rep_1074_c_0_372 | 361418 | 362494 | - | GT4 |
| TC | Rep_1074_c_0 | Rep_1074_c_0_373 | 362494 | 364188 | - | 3.A.1.106.15 |
| pfam | Rep_1074_c_0 | Rep_1074_c_0_374 | 364182 | 365168 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| pfam | Rep_1074_c_0 | Rep_1074_c_0_375 | 365227 | 366021 | - | DNA_pol_B_exo1 | DNA_pol_B_exo2 | RNase_H_2 |
| CAZyme | Rep_1074_c_0 | Rep_1074_c_0_376 | 366088 | 367116 | + | GT9 |
| pfam | Rep_1074_c_0 | Rep_1074_c_0_377 | 367106 | 367984 | + | Lip_A_acyltrans |
| CAZyme | Rep_1074_c_0 | Rep_1074_c_0_378 | 367981 | 368682 | + | GT2 |
Gene ID: Rep_1074_c_0_364
Type: TC
Location: 351919 - 353694 (-)
Type: TC
Location: 351919 - 353694 (-)
Gene ID: Rep_1074_c_0_365
Type: STP
Location: 353696 - 354856 (-)
Type: STP
Location: 353696 - 354856 (-)
Gene ID: Rep_1074_c_0_366
Type: pfam
Location: 354954 - 355544 (-)
Type: pfam
Location: 354954 - 355544 (-)
Gene ID: Rep_1074_c_0_367
Type: TC
Location: 355531 - 356133 (-)
Type: TC
Location: 355531 - 356133 (-)
Gene ID: Rep_1074_c_0_368
Type: CAZyme
Location: 356126 - 357256 (-)
Type: CAZyme
Location: 356126 - 357256 (-)
Gene ID: Rep_1074_c_0_369
Type: CAZyme
Location: 357266 - 359407 (-)
Type: CAZyme
Location: 357266 - 359407 (-)
Gene ID: Rep_1074_c_0_370
Type: CAZyme
Location: 359411 - 360508 (-)
Type: CAZyme
Location: 359411 - 360508 (-)
Gene ID: Rep_1074_c_0_371
Type: CAZyme
Location: 360496 - 361425 (-)
Type: CAZyme
Location: 360496 - 361425 (-)
Gene ID: Rep_1074_c_0_372
Type: CAZyme
Location: 361418 - 362494 (-)
Type: CAZyme
Location: 361418 - 362494 (-)
Gene ID: Rep_1074_c_0_373
Type: TC
Location: 362494 - 364188 (-)
Type: TC
Location: 362494 - 364188 (-)
Gene ID: Rep_1074_c_0_374
Type: pfam
Location: 364182 - 365168 (-)
Type: pfam
Location: 364182 - 365168 (-)
Gene ID: Rep_1074_c_0_375
Type: pfam
Location: 365227 - 366021 (-)
Type: pfam
Location: 365227 - 366021 (-)
Gene ID: Rep_1074_c_0_376
Type: CAZyme
Location: 366088 - 367116 (+)
Type: CAZyme
Location: 366088 - 367116 (+)
Gene ID: Rep_1074_c_0_377
Type: pfam
Location: 367106 - 367984 (+)
Type: pfam
Location: 367106 - 367984 (+)
Gene ID: Rep_1074_c_0_378
Type: CAZyme
Location: 367981 - 368682 (+)
Type: CAZyme
Location: 367981 - 368682 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Campylobacteraceae
Genus
Campylobacter_D
Species
Campylobacter_D jejuni
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.